Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_502905.2 | Gene: | lgc-19 / 190895 | WormBaseID: | WBGene00013655 | Length: | 400 | Species: | Caenorhabditis elegans |
Alignment Length: | 366 | Identity: | 79/366 - (21%) |
---|---|---|---|
Similarity: | 155/366 - (42%) | Gaps: | 74/366 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 KRLYDDLLSNYNKLVRPVVNTTDV-------------LKVCIKLKLSQLIDVNLKNQIMTTNLWV 64
Fly 65 EQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRP--------DIVLYNNADGNFEVTLATKATIYSE 121
Fly 122 GLVEWKPPAI-YKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLS 185
Fly 186 EFYMSV------------EWDILEV-----PAVRNEKFYTCCDEPYLDIT-FNITMRRKTLFYTV 232
Fly 233 NIIIPCMGISFLTVLTFYL-PSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIF 296
Fly 297 AMILVSISICVTVVVLNVH-FRSPQTHKMAPWVKRVFIDFL 336 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 79/366 (22%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 55/253 (22%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 22/105 (21%) | ||
lgc-19 | NP_502905.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 47/212 (22%) |
LGIC_TM_cation | 259..>346 | CDD:349853 | 19/87 (22%) | ||
TM1 helix | 263..284 | CDD:349853 | 5/20 (25%) | ||
TM2 helix | 292..313 | CDD:349853 | 0/20 (0%) | ||
TM3 helix | 323..346 | CDD:349853 | 4/22 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |