DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and lgc-6

DIOPT Version :10

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_501410.3 Gene:lgc-6 / 184621 WormBaseID:WBGene00017544 Length:425 Species:Caenorhabditis elegans


Alignment Length:332 Identity:77/332 - (23%)
Similarity:154/332 - (46%) Gaps:38/332 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SNYNKLVRPVVNTT---------DVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQ---SWYDYKL 73
            ||...|::.:.|.|         |:..|.|......|:.:   :|...|..:.|:   .|||..|
 Worm    17 SNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSM---DQTQETIQYSEEFLLRWYDPIL 78

  Fly    74 RWEPKEYGGVH-MLHVPSDHIWRPDIVLYNNADGNFEVTLATK----ATIYSEGLVEWKPPAIYK 133
            .|........: .:.:.:...|.||::..|..|.:   .|..|    |.:...|.:....||:..
 Worm    79 HWNQSAVSYENDWIKISASRAWIPDVIFTNGIDMD---PLLDKDMQMADLRYNGEIRTSRPAVVS 140

  Fly   134 SSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEV 198
            |.|.::::.||:|.|.|.:..|||.:     |.|.:..|  |:.:.:......|..:.||:::.:
 Worm   141 SPCPLEIDNFPYDVQKCNISMGSWAF-----DRRFLSVQ--SSTIEILPQKGRFEGNSEWELISI 198

  Fly   199 PAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGE----KV 259
            ..||::.:.|..:|.:.:||:.:|::||.::|.:.|..|...:..:|:...:.|:.:.:    ||
 Worm   199 LTVRSDSYDTLLEEWFSEITYVVTLKRKPVYYVLVIQAPTFILCTITIFGLFTPNSNEDERLSKV 263

  Fly   260 TLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKM 324
            .|.:::..::.:...||.:::|..|. :||||.|:|..:.:|:.:...::::...| ....|..:
 Worm   264 ELCLNMFAAISMMLQLVSDMMPKASR-LPLLGNYIIAEIFVVTAATIASIIIQQTH-HHVHTSAI 326

  Fly   325 AP--WVK 329
            .|  |::
 Worm   327 RPRRWLR 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:455710 77/332 (23%)
LGIC_ECD_nAChR_proto_alpha-like 11..229 CDD:349832 54/224 (24%)
Cys-loop 136..150 CDD:349832 5/13 (38%)
lgc-6NP_501410.3 LIC 1..424 CDD:455710 77/332 (23%)
LGIC_ECD_cation 42..226 CDD:349790 46/196 (23%)
Cys-loop 143..157 CDD:349790 5/13 (38%)

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