DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and lgc-23

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_510016.2 Gene:lgc-23 / 182622 WormBaseID:WBGene00007594 Length:403 Species:Caenorhabditis elegans


Alignment Length:377 Identity:78/377 - (20%)
Similarity:143/377 - (37%) Gaps:86/377 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NYNKLVRPVVNTTD-----VLKVCI--KLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKE 79
            ::.||...|:...|     .|.|.|  :|||..:..|:.|...:|..|.|:..|.|.:|:|:|..
 Worm    33 DHRKLKEDVLGPLDGSMPSELPVFIGAQLKLDHISRVDEKTGFLTLALTVKFMWSDERLQWDPSH 97

  Fly    80 YGG-----VHMLHVPSDHIWRPDIVLYNNADGNFEVTL------ATKATIYSEGLVEWKPPAIYK 133
            |.|     :..:......||:|.|.:.|..:.....|:      ..:..|:|:|.|......:.|
 Worm    98 YSGFTRTRLEFVDFWLYQIWKPRIYMTNTYERRQSKTIDLLSNTLVEMDIHSKGFVMTTTKILLK 162

  Fly   134 SSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQ---GSNVVAVGV--DLSEFYMSVEW 193
            :.|.:|.:.:|.|.|.|...|           :.:|:...   ||:::....  |.::....|..
 Worm   163 TFCFLDFKGYPHDFQNCSFSF-----------IPNMNANDIFLGSSMLKAKFTKDFTDPQQVVRV 216

  Fly   194 DILEVPAVRNEKFYTCCDEPYL-DIT------------FNITMRRKTLFYTVNIIIPCMGISFLT 245
            ...::..|..|..|...:...| |:|            |.|.::||.::..:.:..|.:.|....
 Worm   217 QDFQINDVVTEDLYLFMNRIVLHDLTREPRSLVRSFVSFTIVLQRKNVYVHLQLYAPMIFICTCL 281

  Fly   246 VLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIP------PTSLVVPLLGKYLIFAMILVSIS 304
            :::.:|||:..  :.|.:..|||.:::|..:.:::|      ||                     
 Worm   282 IISGFLPSEYA--LPLLVFNLISEYLYFHNIKDVLPTDFDGTPT--------------------- 323

  Fly   305 ICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFLPAFLFIKRPTYNFETSKLLL 356
                 :.|...|...:|..:..|..     |:...:..|:..|...:||..|
 Worm   324 -----IALIATFTLAETMSIIGWKM-----FIITIMTKKQKAYFLNSSKFPL 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 78/377 (21%)
Neur_chan_LBD 12..227 CDD:280998 54/240 (23%)
Neur_chan_memb 234..505 CDD:280999 23/129 (18%)
lgc-23NP_510016.2 Neur_chan_LBD 34..262 CDD:367255 53/238 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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