Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510016.2 | Gene: | lgc-23 / 182622 | WormBaseID: | WBGene00007594 | Length: | 403 | Species: | Caenorhabditis elegans |
Alignment Length: | 377 | Identity: | 78/377 - (20%) |
---|---|---|---|
Similarity: | 143/377 - (37%) | Gaps: | 86/377 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 22 NYNKLVRPVVNTTD-----VLKVCI--KLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKE 79
Fly 80 YGG-----VHMLHVPSDHIWRPDIVLYNNADGNFEVTL------ATKATIYSEGLVEWKPPAIYK 133
Fly 134 SSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQ---GSNVVAVGV--DLSEFYMSVEW 193
Fly 194 DILEVPAVRNEKFYTCCDEPYL-DIT------------FNITMRRKTLFYTVNIIIPCMGISFLT 245
Fly 246 VLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIP------PTSLVVPLLGKYLIFAMILVSIS 304
Fly 305 ICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFLPAFLFIKRPTYNFETSKLLL 356 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 78/377 (21%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 54/240 (23%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 23/129 (18%) | ||
lgc-23 | NP_510016.2 | Neur_chan_LBD | 34..262 | CDD:367255 | 53/238 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |