Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_500341.1 | Gene: | lgc-9 / 182195 | WormBaseID: | WBGene00015412 | Length: | 464 | Species: | Caenorhabditis elegans |
Alignment Length: | 514 | Identity: | 116/514 - (22%) |
---|---|---|---|
Similarity: | 208/514 - (40%) | Gaps: | 115/514 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 LYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKE 79
Fly 80 YGGVHMLHVPSDHIWRPDIVLYNN-------ADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCE 137
Fly 138 IDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEVPAVR 202
Fly 203 NEKFYTCCDEPY-LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLP-SDSG---EKVTLS 262
Fly 263 ISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPW 327
Fly 328 VKRVFIDFLPAFLFIKRPTYNFETSKLLLKDTHACFYPYYSATNIDRLVSSGYNNSLPKEDLSQS 392
Fly 393 ITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDMDIGPLGMKSPILNNPAFSHSKCLPKIHKSCF 457
Fly 458 CVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIF----TLAVVVGTAGIILQAPTL 512 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 113/505 (22%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 53/219 (24%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 59/278 (21%) | ||
lgc-9 | NP_500341.1 | Neur_chan_LBD | 42..245 | CDD:280998 | 53/219 (24%) |
Neur_chan_memb | 252..>347 | CDD:280999 | 30/95 (32%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |