Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_503167.1 | Gene: | lgc-26 / 178554 | WormBaseID: | WBGene00021981 | Length: | 486 | Species: | Caenorhabditis elegans |
Alignment Length: | 540 | Identity: | 114/540 - (21%) |
---|---|---|---|
Similarity: | 215/540 - (39%) | Gaps: | 115/540 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 AVAGNPDAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 69
Fly 70 DYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLAT--KATIYSEGLVEWKPPAIY 132
Fly 133 KSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVE----- 192
Fly 193 -------WDILEVPAVRNEKFY---TCCD-EP-------YLDITFNITMRRKTLFYTVNIIIPCM 239
Fly 240 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSIS 304
Fly 305 ICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFLPAFLFIKRPT-YNFETSKLLLKDTHACFYPYYS 368
Fly 369 ATNIDRLVSSGYNNSLPKEDLSQSITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDMDIG---P 430
Fly 431 L---GMKSPILNNPAFSHSKCLPKIHKSCFCVRF----IAEHTKMQEDSTKVKEDWKYVAMVLDR 488
Fly 489 ------LFLWIFTLAVVVGT 502 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 114/540 (21%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 58/239 (24%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 54/286 (19%) | ||
lgc-26 | NP_503167.1 | LGIC_ECD_cation | 52..256 | CDD:349790 | 47/213 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |