Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_498710.2 | Gene: | cup-4 / 176104 | WormBaseID: | WBGene00000845 | Length: | 433 | Species: | Caenorhabditis elegans |
Alignment Length: | 376 | Identity: | 71/376 - (18%) |
---|---|---|---|
Similarity: | 142/376 - (37%) | Gaps: | 93/376 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 LYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKE 79
Fly 80 YGGVHMLHVPSDHIWRPDIVLYNNADG---NFEVTLATKATIYSEG----LVEWKPPAIYKSSCE 137
Fly 138 IDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHM-----------DEQQGSNVVA------------ 179
Fly 180 --------VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 236
Fly 237 PCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV-----VEIIPPTSLVVPLLGKYLIF 296
Fly 297 AMILVSISICVTVVVLNVH--------FRSPQTHKMAPWVKRVFI--DFLP 337 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 71/376 (19%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 47/249 (19%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 24/119 (20%) | ||
cup-4 | NP_498710.2 | Neur_chan_LBD | 48..>222 | CDD:280998 | 40/172 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |