DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and cup-4

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_498710.2 Gene:cup-4 / 176104 WormBaseID:WBGene00000845 Length:433 Species:Caenorhabditis elegans


Alignment Length:376 Identity:71/376 - (18%)
Similarity:142/376 - (37%) Gaps:93/376 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKE 79
            |...:...||...||:.|.:....|.:...:.. :.:|.:.|.||.:..:...|:|..|.|:||:
 Worm    51 LEQKIFRGYNPKNRPMKNASFPTIVDVHWHIIH-VSINQREQTMTVHGHIYMRWFDEFLVWDPKD 114

  Fly    80 YGGVHMLHVPSDHIWRPDIVLYNNADG---NFEVTLATKATIYSEG----LVEWKPPAIYKSSCE 137
            :..:....|....:|:|.|.:.|:|.|   .|:.:.:....|...|    .||..|....|..|.
 Worm   115 FNNIQYARVKKWQVWQPKIKVSNSASGLGSAFDFSTSAHVIIQMMGKDRAKVEMYPTFSIKVGCA 179

  Fly   138 IDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHM-----------DEQQGSNVVA------------ 179
            .|...:|:|...|.:...| |.....|.|:::           :||:...:::            
 Worm   180 FDFTDYPYDLNKCAINLFS-TSTMADVQLQNLYAIPPTLSFGWEEQKMKRIISDFKIQNVSSSAL 243

  Fly   180 --------VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 236
                    ....::.|.:...|.:|.|                     .::..|.:..:...::.
 Worm   244 YYTNGNITSSAPITGFDLGSTWSMLAV---------------------TVSFVRHSPLFEAAVVT 287

  Fly   237 PCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV-----VEIIPPTSLVVPLLGKYLIF 296
            ||:.::.|..:||::.|.|      |..:|:.||.:..|:     ||.:|.:...:|       |
 Worm   288 PCIVVASLISMTFFIDSLS------STFLLMMLHFYVQLIFLHDLVEKLPLSVSEIP-------F 339

  Fly   297 AMILVSISICVTVVVLNVH--------FRSPQTHKMAPWVKRVFI--DFLP 337
            .:.|:.|.:....:.|.:|        ::.|...::    .::|:  :::|
 Worm   340 CIKLIGILMYTNGLTLVLHSSLLCGSYYKCPVPQQL----NKIFVIEEYIP 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 71/376 (19%)
Neur_chan_LBD 12..227 CDD:280998 47/249 (19%)
Neur_chan_memb 234..505 CDD:280999 24/119 (20%)
cup-4NP_498710.2 Neur_chan_LBD 48..>222 CDD:280998 40/172 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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