DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and lgc-27

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_740977.1 Gene:lgc-27 / 173802 WormBaseID:WBGene00022283 Length:428 Species:Caenorhabditis elegans


Alignment Length:400 Identity:82/400 - (20%)
Similarity:160/400 - (40%) Gaps:86/400 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNL----KNQI---MTTNLWVEQSW 68
            ||.|:.|.  ||...::.|.|...:.|:|       |::|.::    .|::   |..|.:::.||
 Worm    56 DADRMQDK--SNALMMLPPTVAAGETLEV-------QVLDGSITEMWMNEVFKEMNINGFLKLSW 111

  Fly    69 YDYKLRWEPKEYGGVHMLHVPS-DHIWRPDI--------------VLYNNADGNFEVTLATKATI 118
            .|.:|||.|:|: ...:|.:.| ..:|.|||              |.|::...|:...:..:   
 Worm   112 KDRRLRWNPEEW-KTEVLRLKSMGRLWSPDINSDKLQTGSQSTDFVNYHDIQSNYNGNVTAR--- 172

  Fly   119 YSEGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVD 183
                 :|::    .|:.|:||...:|.|.:.|.....|..|..:   :|.:.|.:|::.:     
 Worm   173 -----LEFR----MKAQCQIDYTEYPNDRKHCCFNLQSNLYKRY---VRFIMEHEGAHEM----- 220

  Fly   184 LSEFYMSVEWDILEVPAVRNEKFYTCCDE---------PYLDITFNITMRRKTLFYTVNIIIPCM 239
            |:.......|.|        :..||...:         ..|::...:..:..||  .|.:.:|.:
 Worm   221 LNTKNTKTNWHI--------DPMYTWISKMNQENDNRAERLEVCVGVVRKSSTL--AVELTLPVL 275

  Fly   240 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSL--VVPLLGKYLIFAMILVS 302
             ||.|.:|.........:::.:.:..|:...:.|..:.|..|....  .:|.:..:..|.:.:..
 Worm   276 -ISALILLLAPFFGKFNQQIYVKMFALLLQFLSFQFLAEKTPQLGFGDNIPKIYVFYAFTIGMTV 339

  Fly   303 ISICVTVVV---LNVHFRSPQTHKMAPWVKRVFIDFLPAFLFI---KRPTYNFETSKLLLKDTHA 361
            :|:..||::   ..|..:.|..|:..     :....|.|.|..   :.||.:..:|| :.:|..:
 Worm   340 LSLIATVMISAMSRVKRKVPPAHRYT-----LLASLLNANLCCGSEEEPTTDGTSSK-MSQDATS 398

  Fly   362 CFYPYYSATN 371
            .:...:||.|
 Worm   399 DWLQVHSALN 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 81/399 (20%)
Neur_chan_LBD 12..227 CDD:280998 50/245 (20%)
Neur_chan_memb 234..505 CDD:280999 27/145 (19%)
lgc-27NP_740977.1 LGIC_ECD 79..248 CDD:355788 42/204 (21%)
Cys-loop 181..195 CDD:349787 5/13 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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