Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_740977.1 | Gene: | lgc-27 / 173802 | WormBaseID: | WBGene00022283 | Length: | 428 | Species: | Caenorhabditis elegans |
Alignment Length: | 400 | Identity: | 82/400 - (20%) |
---|---|---|---|
Similarity: | 160/400 - (40%) | Gaps: | 86/400 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 DAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNL----KNQI---MTTNLWVEQSW 68
Fly 69 YDYKLRWEPKEYGGVHMLHVPS-DHIWRPDI--------------VLYNNADGNFEVTLATKATI 118
Fly 119 YSEGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVD 183
Fly 184 LSEFYMSVEWDILEVPAVRNEKFYTCCDE---------PYLDITFNITMRRKTLFYTVNIIIPCM 239
Fly 240 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSL--VVPLLGKYLIFAMILVS 302
Fly 303 ISICVTVVV---LNVHFRSPQTHKMAPWVKRVFIDFLPAFLFI---KRPTYNFETSKLLLKDTHA 361
Fly 362 CFYPYYSATN 371 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 81/399 (20%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 50/245 (20%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 27/145 (19%) | ||
lgc-27 | NP_740977.1 | LGIC_ECD | 79..248 | CDD:355788 | 42/204 (21%) |
Cys-loop | 181..195 | CDD:349787 | 5/13 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |