DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and LOC1268935

DIOPT Version :10

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:XP_307512.4 Gene:LOC1268935 / 1268935 VectorBaseID:AGAMI1_005560 Length:424 Species:Anopheles gambiae


Alignment Length:366 Identity:71/366 - (19%)
Similarity:135/366 - (36%) Gaps:70/366 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NPDAKR------LYDDLLSN-YNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQ 66
            |.|.||      :...|..| |:..:||..:..|.:.:.....|.. .|::....:|:..:....
Mosquito    25 NCDKKRDNVQYTIKQHLFCNGYDPKIRPAKSEFDSINITTYAVLYS-FDISEYRSVMSFQVNYYM 88

  Fly    67 SWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFE-----VTLATKATIYSEGLVEW 126
            .|.|..|.|...::..:..|::.:|.||.|.   :.|.:.::|     ..|.....:...|.|..
Mosquito    89 RWQDSSLAWNASDWSNITTLNINNDEIWSPQ---FENINSDYEGQPSVSCLNPDCLLRVNGYVSC 150

  Fly   127 KPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSV 191
            .|.....:.|..|...:||:...|.:.|.:       .|...:||.....|:.. :..:....:.
Mosquito   151 SPVCRISAKCSSDYSRWPFNTLVCRMWFTN-------RDKELVDEVNFLPVITY-LPSNRHLPTT 207

  Fly   192 EWDI---------LEVPAVRN----EKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISF 243
            :|.:         |.:|...:    |..:.....|:|.|..              |.:|...:|.
Mosquito   208 KWCVTSISSNKTQLSIPGATSRTVEELEFNLEHSPHLIIAI--------------IYLPAFALSM 258

  Fly   244 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVT 308
            |.:....|.|...||:.:.   ||.:...|.|:.::..||. .:|.:..::|.:|||..:....|
Mosquito   259 LNIFVCLLDSRVKEKIVIP---LICMIFHFQLLQQMSNPTP-EIPGVVLFIIASMILTFLLFVST 319

  Fly   309 VVVLNVH-------------FRSPQTHKMAPWVKRVFIDFL 336
            ::...:|             .|:..::::..|:.:|  |:|
Mosquito   320 LINRWLHGLQSTPPNIVIRSMRAILSNRLMNWILKV--DYL 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:455710 71/366 (19%)
LGIC_ECD_nAChR_proto_alpha-like 11..229 CDD:349832 44/242 (18%)
Cys-loop 136..150 CDD:349832 4/13 (31%)
LOC1268935XP_307512.4 None

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