DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and Chrnd

DIOPT Version :9

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_067611.2 Gene:Chrnd / 11447 MGIID:87893 Length:520 Species:Mus musculus


Alignment Length:512 Identity:171/512 - (33%)
Similarity:277/512 - (54%) Gaps:52/512 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GNPDAKRLYDDLLS--NYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYD 70
            |..:.:||...|.:  .|:|.:|||....|.:.|.:.|.||.||.:....:.:|||:|::.:|.|
Mouse    24 GLNEEQRLIQHLFNEKGYDKDLRPVARKEDKVDVALSLTLSNLISLKEVEETLTTNVWIDHAWVD 88

  Fly    71 YKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSS 135
            .:|:|:..::|.:.:|.:|.|.:|.|:|||.||.||:|:::.|....:|..|.|.|.||||::||
Mouse    89 SRLQWDANDFGNITVLRLPPDMVWLPEIVLENNNDGSFQISYACNVLVYDSGYVTWLPPAIFRSS 153

  Fly   136 CEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSN---VVAVGVDLSEFYMSVEWDILE 197
            |.|.|.|||||.|.|.|||.|..|...::.|....|::.:.   :..:.:|...|..:.||:|:.
Mouse   154 CPISVTYFPFDWQNCSLKFSSLKYTAKEITLSLKQEEENNRSYPIEWIIIDPEGFTENGEWEIVH 218

  Fly   198 VPAVRNEKFYTCCDEP-YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTL 261
            ..|..|.......|.. :.|:||.:.:|||.|||.:||::||:.|||:..|.||||.|.|||.::
Mouse   219 RAAKLNVDPSVPMDSTNHQDVTFYLIIRRKPLFYIINILVPCVLISFMINLVFYLPGDCGEKTSV 283

  Fly   262 SISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAP 326
            :||:|::..||.||:.:.:|.||:.:||:||:|:|.|:||::.:.:.|:|||:|||:|.||.::.
Mouse   284 AISVLLAQSVFLLLISKRLPATSMAIPLVGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSE 348

  Fly   327 WVKRVFIDFLPAFLFIKRPTYNFETSKLLLKDTHACFY-----PYYSATNIDRLVSSGYNNSLPK 386
            .||:.|::.||..|.:.||.......:.|::.:.:..|     .|:|..:...|:   :.....:
Mouse   349 GVKKFFLETLPKLLHMSRPAEEDPGPRALIRRSSSLGYICKAEEYFSLKSRSDLM---FEKQSER 410

  Fly   387 EDLSQSITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDMDIGPLGMKSPILNNPAFSHSKCLPK 451
            ..|::.:|.           ...||   .||:::                  ....|:..|  |.
Mouse   411 HGLARRLTT-----------ARRPP---ASSEQV------------------QQELFNEMK--PA 441

  Fly   452 IHKSCFCVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIILQ 508
            :..:    .||..|.:.|....:.|::|..||..:|||.|::.|..:|||||.|.||
Mouse   442 VDGA----NFIVNHMRDQNSYNEEKDNWNQVARTVDRLCLFVVTPVMVVGTAWIFLQ 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 168/507 (33%)
Neur_chan_LBD 12..227 CDD:280998 78/220 (35%)
Neur_chan_memb 234..505 CDD:280999 84/275 (31%)
ChrndNP_067611.2 LIC 1..479 CDD:273305 162/495 (33%)
Neur_chan_LBD 28..249 CDD:280998 78/220 (35%)
Neur_chan_memb 256..492 CDD:280999 84/276 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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