Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_056545.3 | Gene: | Chrna4 / 11438 | MGIID: | 87888 | Length: | 629 | Species: | Mus musculus |
Alignment Length: | 599 | Identity: | 249/599 - (41%) |
---|---|---|---|
Similarity: | 331/599 - (55%) | Gaps: | 121/599 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 KRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEP 77
Fly 78 KEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVEY 142
Fly 143 FPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEVPAVRNEKFY 207
Fly 208 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVF 272
Fly 273 FLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFLP 337
Fly 338 AFLFIKRPTYNFETSKLLLKDTHAC-----FYPYYSA--------------------TNIDRLVS 377
Fly 378 SGYNNSLPKE---DLSQSITANG---PFGGSCQVHGP------------------VP-------- 410
Fly 411 -------PLTHCSSDEIAA--------------------VPDMD--------------IGPL--- 431
Fly 432 ---GMKSPILNNPAFSHSKCLPKIHKSCFCVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWI 493
Fly 494 FTLAVVVGTAGIIL 507 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 247/595 (42%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 113/213 (53%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 129/374 (34%) | ||
Chrna4 | NP_056545.3 | Neur_chan_LBD | 39..245 | CDD:280998 | 113/213 (53%) |
Neur_chan_memb | 252..620 | CDD:280999 | 130/375 (35%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 420..459 | 10/40 (25%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 503..529 | 2/25 (8%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I2060 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 476 | 1.000 | Inparanoid score | I1470 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm8871 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101158 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 8.760 |