Sequence 1: | NP_001097669.2 | Gene: | nAChRalpha4 / 40521 | FlyBaseID: | FBgn0266347 | Length: | 539 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_659052.1 | Gene: | Chrna2 / 110902 | MGIID: | 87886 | Length: | 512 | Species: | Mus musculus |
Alignment Length: | 506 | Identity: | 232/506 - (45%) |
---|---|---|---|
Similarity: | 308/506 - (60%) | Gaps: | 51/506 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 14 RLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPK 78
Fly 79 EYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVEYF 143
Fly 144 PFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWDILEVPAVRNEKFYT 208
Fly 209 CCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFF 273
Fly 274 LLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIDFLPA 338
Fly 339 FLFIKRPTYNFE---TSKLLLKDTHACFYPYYSATNIDRLVSSGYNNSLPKEDLSQSITANGPFG 400
Fly 401 GSCQVHGPVPPLTHCSSDEIAAVPDMDIGPL-GMKS-------PILNNPAFSHSKCL-PKIHKSC 456
Fly 457 FCVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIIL 507 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha4 | NP_001097669.2 | LIC | 1..505 | CDD:273305 | 230/502 (46%) |
Neur_chan_LBD | 12..227 | CDD:280998 | 112/212 (53%) | ||
Neur_chan_memb | 234..505 | CDD:280999 | 113/282 (40%) | ||
Chrna2 | NP_659052.1 | LIC | 15..505 | CDD:273305 | 232/506 (46%) |
LGIC_ECD_nAChR_A2 | 36..242 | CDD:349816 | 112/212 (53%) | ||
Cys-loop | 160..174 | CDD:349816 | 9/13 (69%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I2060 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 476 | 1.000 | Inparanoid score | I1470 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG45250 | |
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000583 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8871 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101158 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2381 |
SonicParanoid | 1 | 1.000 | - | - | X294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.810 |