DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and Chrna2

DIOPT Version :10

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_659052.1 Gene:Chrna2 / 110902 MGIID:87886 Length:512 Species:Mus musculus


Alignment Length:85 Identity:19/85 - (22%)
Similarity:29/85 - (34%) Gaps:21/85 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MCFLV------------KRKPGYKRDWRFGTRELSSVVAKLCSEGDEELIRREGFFKRRSEF--- 61
            :|||:            ..:|.|..:    ..:|.:.:..|....||.|...|...|.|.:.   
Mouse    73 LCFLLLTAVIALSVYIYTNQPNYPEE----RHQLLTKITNLTENKDELLTNIENLLKDREQLIQQ 133

  Fly    62 --IVAGAVLLEEIFKALGIE 79
              |:||....:..|..|..|
Mouse   134 HQIIAGWTYFQSSFYYLSNE 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:455710 19/85 (22%)
LGIC_ECD_nAChR_proto_alpha-like 11..229 CDD:349832 19/85 (22%)
Cys-loop 136..150 CDD:349832
Chrna2NP_659052.1 LIC 15..505 CDD:455710 19/85 (22%)
LGIC_ECD_nAChR_A2 36..242 CDD:349816 19/85 (22%)
Cys-loop 160..174 CDD:349816
Blue background indicates that the domain is not in the aligned region.

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