DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha4 and chrna6

DIOPT Version :10

Sequence 1:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster
Sequence 2:XP_031759256.1 Gene:chrna6 / 100495287 XenbaseID:XB-GENE-6033398 Length:488 Species:Xenopus tropicalis


Alignment Length:139 Identity:33/139 - (23%)
Similarity:53/139 - (38%) Gaps:40/139 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TRELSSVVAK------------LCSEGDEELIRREGFF---------------KRRSEFIVAGAV 67
            |..|.||||:            :..:..|:|:.|...|               |..:|.:.|..|
 Frog   124 TEILKSVVARFDAGELITQRELVSRQVSEDLMERAATFGLILDDVSLTHLTFGKEFTEAVEAKQV 188

  Fly    68 LLEEIFKALGI----EDMEVSEYALAEG------VIADSLAKAFDGSYDLNANARWRSVMRLATR 122
            ..:|..:|..|    |..:.:....|||      :||.|||.|.||..:|.   :..:...:|.:
 Frog   189 AQQEAERARFIVEKAEQQKKAAVISAEGDSKAAELIATSLADAGDGLIELR---KLEAAEDIAYQ 250

  Fly   123 FSGKKRMTH 131
            .|..:.:|:
 Frog   251 LSRARNVTY 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:455710 33/139 (24%)
LGIC_ECD_nAChR_proto_alpha-like 11..229 CDD:349832 33/139 (24%)
Cys-loop 136..150 CDD:349832
chrna6XP_031759256.1 LIC 29..481 CDD:455710 33/139 (24%)
LGIC_ECD 31..237 CDD:475126 29/112 (26%)
Blue background indicates that the domain is not in the aligned region.

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