| Sequence 1: | XP_011531155.1 | Gene: | LTBP1 / 4052 | HGNCID: | 6714 | Length: | 1722 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_067598.2 | Gene: | Ltbp1 / 59107 | RGDID: | 68379 | Length: | 1712 | Species: | Rattus norvegicus |
| Alignment Length: | 1722 | Identity: | 1542/1722 - (89%) |
|---|---|---|---|
| Similarity: | 1616/1722 - (93%) | Gaps: | 10/1722 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MAGAWLRWGLLLWAGLLASSAHGRLRRITYVVHPGPGLAAGALPLSGPPRSRTFNVALNARYSRS 65
Human 66 SAAAGAPSRASPGVPSERTRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNPGGHPAAAP 130
Human 131 FTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQLQGVNVCGGRCCHGWSKAPGSQRCTKPSCVPPC 195
Human 196 QNGGMCLRPQLCVCKPGTKGKACETIAAQDTSSPVFGGQSPGAASSWGPPEQAAKHTSSKKADTL 260
Human 261 PRVSPVAQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQS 325
Human 326 TEGSFPLRYVQDQVAAPFQLSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAA 390
Human 391 DTLTATNFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGT 455
Human 456 HVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGPTGQKTKEAQPGQSQ 520
Human 521 VSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTV 585
Human 586 GTSWGFNKCQKCPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRC 650
Human 651 TCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSGRQCMHPLSVHLTKQLCCCSVGKAWGPHCE 715
Human 716 KCPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPAKEEP 780
Human 781 VEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPGIVIEK 845
Human 846 TSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQ 910
Human 911 QRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCGEGHCVN 975
Human 976 TVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDV 1040
Human 1041 DECLEPNVCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCT 1105
Human 1106 CGQGYQLSAAKDQCEDIDECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDK 1170
Human 1171 SVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFHCVCQQGFS 1235
Human 1236 ISADGRTCEDIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQAPQDGQGCVDVNECELLSGVCGE 1300
Human 1301 AFCENVEGSFLCVCADENQEYSPMTGQCRSRTSTDLDVDVDQPKEEKKECYYNLNDASLCDNVLA 1365
Human 1366 PNVTKQECCCTSGVGWGDNCEIFPCPVLGTAEFTEMCPKGKGFVPAGESSSEAGGENYKDADECL 1430
Human 1431 LFGQEICKNGFCLNTRPGYECYCKQGTYYDPVKLQCFDMDECQDPSSCIDGQCVNTEGSYNCFCT 1495
Human 1496 HPMVLDASEKRCIRPAESNEQIEETDVYQDLCWEHLSDEYVCSRPLVGKQTTYTECCCLYGEAWG 1560
Human 1561 MQCALCPLKDSDDYAQLCNIPVTGRRQPYGRDALVDFSEQYTPEADPYFIQDRFLNSFEELQAEE 1625
Human 1626 CGILNGCENGRCVRVQEGYTCDCFDGYHLDTAKMTCVDVNECDELNNRMSLCKNAKCINTDGSYK 1690
Human 1691 CLCLPGYVPSDKPNYCTPLNTALNLEKDSDLE 1722 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LTBP1 | XP_011531155.1 | EGF_CA | 626..>656 | CDD:214542 | 27/29 (93%) |
| TB | 689..724 | CDD:279073 | 32/34 (94%) | ||
| cEGF | 897..919 | CDD:289433 | 19/21 (90%) | ||
| EGF_CA | 916..956 | CDD:284955 | 36/39 (92%) | ||
| EGF_CA | 958..998 | CDD:214542 | 31/39 (79%) | ||
| EGF_CA | 999..1032 | CDD:238011 | 30/32 (94%) | ||
| EGF_CA | 1039..1078 | CDD:214542 | 30/38 (79%) | ||
| EGF_CA | 1080..1111 | CDD:214542 | 28/30 (93%) | ||
| EGF_CA | 1121..1161 | CDD:214542 | 34/39 (87%) | ||
| EGF_CA | 1162..1202 | CDD:214542 | 34/39 (87%) | ||
| EGF_CA | 1203..1244 | CDD:214542 | 35/40 (88%) | ||
| EGF_CA | 1245..1286 | CDD:214542 | 40/40 (100%) | ||
| TB | 1360..1397 | CDD:279073 | 34/36 (94%) | ||
| TB | 1537..1573 | CDD:279073 | 34/35 (97%) | ||
| EGF_CA | 1663..>1697 | CDD:214542 | 30/33 (91%) | ||
| Ltbp1 | NP_067598.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 63..148 | 54/88 (61%) | |
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 752..803 | 48/50 (96%) | |||
| 8-Cys3 region. /evidence=ECO:0000250|UniProtKB:Q14766 | 1335..1402 | 62/66 (94%) | |||
| C-terminal domain. /evidence=ECO:0000250|UniProtKB:Q14766 | 1498..1712 | 200/213 (94%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83690910 | |
| Domainoid | 1 | 1.000 | 986 | 1.000 | Domainoid score | I1618 |
| eggNOG | 1 | 0.900 | - | - | E33208_3BA47 | |
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H522 | |
| Inparanoid | 1 | 1.050 | 3361 | 1.000 | Inparanoid score | I382 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG39242 | |
| OrthoDB | 1 | 1.010 | - | - | D10682at7742 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0008834 | |
| OrthoInspector | 1 | 1.000 | - | - | oto135615 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_104731 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR24034 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X6585 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| 18 | 18.270 | |||||