DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Cat and Vinac1

DIOPT Version :9

Sequence 1:NP_524219.1 Gene:alpha-Cat / 40517 FlyBaseID:FBgn0010215 Length:917 Species:Drosophila melanogaster
Sequence 2:NP_001357870.1 Gene:Vinac1 / 668894 MGIID:3649276 Length:1413 Species:Mus musculus


Alignment Length:880 Identity:167/880 - (18%)
Similarity:343/880 - (38%) Gaps:172/880 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DFGQIALKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGKSKRASALVAAVEK---A 73
            |||.          .|:..::|:.:.|:.:|:..|:.:   .::|:.::|..::|....|:   |
Mouse    10 DFGP----------TIQNRAMEQIITPMTVQLCHLLIS---VERKEVQNKALASLQKVAEQLANA 61

  Fly    74 TENFIQKGEQIAYENPD--ITQEMLTAVDEVKKTGDAMSIAAREFSEDPCSSLKRGNMVRAARNL 136
            :|.|:....::|.::.:  :.:||....:.:..:|..:...|.:....|.|......:|..|:.:
Mouse    62 SEEFVHVASRLAGDSEEKWLREEMKPVAESLILSGRNILRVAEKLHLQPESQRHWEELVATAQQV 126

  Fly   137 LSAVTRLLILADMVDVHLLLKS----LHIVEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAA 197
            |....::|:|.|...|.....:    |..|| .|.:.::.:|....:|::.......|.|..:.|
Mouse   127 LVDTKKVLLLDDAAAVRKTRTAANWCLTCVE-ALEEAEDTTSLRTSLDDLAAALFRLGGLTARWA 190

  Fly   198 KRQQELKDPQLRDDLAAARAMLKKHSTMLLTASKVYVRH---PELDLAKVNRDFI-----LKQVC 254
            ..|.          |..||..|......||.|:..::||   |:| :|...|.|.     |:::.
Mouse   191 WDQH----------LGRARHRLGCCVPALLAAAHGHLRHPRDPQL-VASRRRVFALTRQSLEELL 244

  Fly   255 DAVNT-ISDVAQGKSSQPTDIYSGAGELAAALDDFDEGIVMDPMTYSEKRSRQLLEERLESIISA 318
            ||:.. :..|..|..||...:..|..:|...|:|...|             ..||:..|.:::..
Mouse   245 DALQPGVGVVGTGVLSQNGALARGLCKLRKVLEDPGPG-------------HLLLDAPLAAVVWH 296

  Fly   319 AALMADADCTRDERRERIVAECNAVRQALQDLLSEYMSNMSQKDNSPGLSRAIDQMCRKTRDLRR 383
            ...:  |.|:..:.|..:|:.|   ||.:|  |...:.::.:  :|||..  .:.:...|..|.|
Mouse   297 CLRL--AACSAPQERMHLVSRC---RQLMQ--LRPGVHSLPR--SSPGTD--CEALRAATDALFR 350

  Fly   384 QLRKAVVDHVSDSFLETTTPLLDLIEAAKSGNEKKVREKSE-----------IFTKHAEKLVEVA 437
            .:|..::..:.|:|.:|.:||..|::||.:.:..:.|..||           .|...|::::.||
Mouse   351 AVRAGLLRQILDTFTDTQSPLETLVQAALATSTIRFRCDSEALAETVQILLDAFHNQAKQMIRVA 415

  Fly   438 NLVCSMSNNEDGVKMVRYAAAQIESLCPQVINAASILTVRPNSKVAQENMTTYR---QAWEVQVR 499
            :||......:...:.:..|.|.::.|   ||....:.:..|.:.....:..|.:   :||..:..
Mouse   416 HLVWVCCPQQQTGRDLEAAVAGLQRL---VIKVKELFSQSPQTLGLDWSPATLQALLEAWARESE 477

  Fly   500 ILTEAVDDITTIDDFLAVSENHILEDVNKCVMALQVGDARDLRATAGAIQGRSSRVCNVVEAEMD 564
            .|....|.:..|.:||:||...:.:.::...:||:.|.:|:...:...::||::.:..|:...:.
Mouse   478 HLLSCFDVVLNIPEFLSVSIQEMTKHLDLSTIALRSGASREFSRSVAFLRGRATHIVQVMSRYVG 542

  Fly   565 NYEPCIYTKRVLEAVKVLRDQVMMKFDQRVGAAV-GALSNNSNKDVDENDFIDASRLVYDGVREI 628
            .....|:...:...|     |.:.:....:|||. |:.:.:|.:|.|.  |:..::.:....:::
Mouse   543 QDPDPIFRNGMRVVV-----QQLAQSSVTLGAATEGSRAEDSAQDTDV--FLTMAKHLIHAAQQV 600

  Fly   629 RRAVLMNRSSEDLDTDTEFEPVEDLTLETRS--------------------------------RS 661
            |         |.||.....:.:..|.::.:.                                :|
Mouse   601 R---------EGLDGSNHPDILSPLRVQVQRFDMTKGWSYFILPSPQHPTASEIKYQRVPGLWKS 656

  Fly   662 SAHTGDQTVDE--YPDISGIC---------TAREAMRKMTEEDKQKIAQQVELFRREKLTFDS-- 713
            ..:|....|::  |..:.|.|         ...:.:..|...:.|.:.........:..|.|:  
Mouse   657 GPNTSLLPVEQLSYTVVPGTCIHGWRFPLPAVSKGVTTMENRNHQVVTLPCTNTPEQNSTVDTVQ 721

  Fly   714 EVAKWDDT-GNDIIFLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTKLDKLTREIA 777
            |....::| |.:.:...:.:..:...:.|..|               |::..|.|..::|.|...
Mouse   722 ETQAGEETLGPERMTGLQEVSTLAPSIIDLAR---------------KEVHSANTGSEELLRVSF 771

  Fly   778 EQCPESSTKKDLLAYLQRIA--------LYCHQIQ 804
            :|  ...|::|....:.|..        |:||.::
Mouse   772 QQ--SQGTREDRWGLVARAGDWYPLCQQLFCHNLE 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-CatNP_524219.1 Vinculin 87..877 CDD:395830 151/802 (19%)
Vinac1NP_001357870.1 Vinculin 15..>610 CDD:366435 136/652 (21%)
Vinculin <1224..1375 CDD:366435
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18914
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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