DRSC/TRiP Functional Genomics Resources

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Protein Alignment alpha-Cat and Vinc

DIOPT Version :9

Sequence 1:NP_524219.1 Gene:alpha-Cat / 40517 FlyBaseID:FBgn0010215 Length:917 Species:Drosophila melanogaster
Sequence 2:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster


Alignment Length:991 Identity:217/991 - (21%)
Similarity:387/991 - (39%) Gaps:184/991 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 TMSVEKTLEPLVLQVTTLVNTKGPSKKKKGKS-KRASALVAAVEKATENFIQKGEQIAYENPD-- 90
            |.::|..|:|:..||:.||...  .:.:.|.: ...|..|..|..|..|.::.|......:.|  
  Fly     6 TKTIESILDPVAQQVSRLVILH--EEAEDGNAMPDLSRPVQVVSAAVANLVKVGRDTINSSDDKI 68

  Fly    91 ITQEMLTAVDEVKKTGDAMSIAAREFSEDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLL 155
            :.|:|.:|:..|:.....:..|:.....||.|...|..::..:|.:|...:.||:..|..:|..:
  Fly    69 LRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIEGSRGILQGTSSLLLCFDESEVRKI 133

  Fly   156 LKSLHIVEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAAKRQQELKDPQLRDDLAAARAMLK 220
            ::....|.|.|...:..::.::|:..::.......::.::...|::||......:.|......:|
  Fly   134 IQECKRVLDYLAVAEVINTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCLEQVK 198

  Fly   221 KHSTMLLTASKVYVRHPE-----LDLAKVNRDF-------------------------------- 248
            ..:.:|:.:.|||:...|     .:.|..||::                                
  Fly   199 TLAPILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLTTYDEDTSELDNLT 263

  Fly   249 ILKQVCDAVNTISDVAQGKSSQPTDIYSGAGELAAALDDFDEGIVMDPMTYSEKRS--------R 305
            :||::.:|::...:.|....|.|..:..|.||.|...       |:|..|...:|.        |
  Fly   264 VLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQ-------VIDNATEISERCLPQDSYPIR 321

  Fly   306 QLLEE----------------------------------RLESIISAAALMADA----------- 325
            :|.:|                                  .|:|::..|.|..|.           
  Fly   322 KLADEVTAMANTLCELRQEGKGQSPQAESLVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQ 386

  Fly   326 ----------------DCTRDERRERIVAE--------CNAVRQA-LQDLLSEYMSNMSQKDNS- 364
                            |....||...::.|        |...::| :|.|..|......|...| 
  Fly   387 GRLEQAVKWLQHPEINDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGSG 451

  Fly   365 PGLSRAIDQMCRKTRDLRRQLRKAVVDHVSDSFLETTTPLLDLIEA-----AKSGNEKKVREKSE 424
            |...:|..|:.:|..:|:..::.|:|:.:...|::.:|||....||     ...|.|:...:||.
  Fly   452 PAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGREQNFNQKSN 516

  Fly   425 IFTKHAEKLVEVANLVCS--MSNNEDGVKMVRYAAAQIESLCPQVINAASILTVRPNSKVAQENM 487
            .....:::..:.:.:|.:  ...|:...:::..:|||::||.||:|:|..|....|.||.|.|::
  Fly   517 NLQAFSDRASKTSRMVAAGGACGNKKIAEILLSSAAQVDSLTPQLISAGRIRMNYPGSKAADEHL 581

  Fly   488 TTYRQAWEVQVRILTEAVDDITTIDDFLAVSENHILEDVNKCVMALQVGDARDLRATAGAIQGRS 552
            ...:|.:...|..:....|..|...||:..||.|:......|..|:.....:.:......|....
  Fly   582 QNLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLI 646

  Fly   553 SRVCNVVEAEMDNYEPCIYTKRVLEAVKVLRDQVMMKFDQRVGAAVGALSNNSNKDVD------- 610
            :||..|.:.|.||.|..::|:|:..|..        :.::.:.|.||.....:....|       
  Fly   647 NRVLLVAKQEADNSEDPVFTERLNAAAN--------RLERSLPAMVGDAKLVATNIADPAAAAAW 703

  Fly   611 ENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPVEDLTLETRSRSSAHTGDQTVDEYP- 674
            :|.|   .||:.| |||:|.|:...: ...|.|... .|:.:|       |:.|..:|..:..| 
  Fly   704 KNSF---QRLLGD-VREVRDAIAPPQ-PPPLPTSLP-PPIPEL-------SALHLSNQNAERAPP 755

  Fly   675 ----DISGICTAREAMRKMTEEDK-----QKIAQQVELFRREKLTFDSEVAKWDDTGNDIIFLAK 730
                ...|:...|....:..:||:     ...|.|..|.....|  ..||.:|....|:||..||
  Fly   756 RPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARGL--HQEVRQWSSKDNEIIAAAK 818

  Fly   731 HMCMIMMEMTD--FTRGRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKKDLLAYL 793
            .|.::|..:::  .:..||   :..::|..||||:||...:.:|.:|:|.||.:...:.:||...
  Fly   819 RMAILMARLSELVLSDSRG---SKRELIATAKKIAEASEDVTRLAKELARQCTDRRIRTNLLQVC 880

  Fly   794 QRIALYCHQIQITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKYSYVASTKYTR 858
            :||.....|::|.|.|||.:....|.  ....::...|:..|:|||.:|..||:.:..||.|...
  Fly   881 ERIPTIGTQLKILSTVKATMLGAQGS--DEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRS 943

  Fly   859 QGTVSSPIVVWKMKAP 874
            ..|  |..:.|..:.|
  Fly   944 DQT--SNRLQWVRRQP 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-CatNP_524219.1 Vinculin 87..877 CDD:395830 202/932 (22%)
VincNP_001284813.1 Vinculin 63..960 CDD:279395 202/932 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467066
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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