DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Cat and Vcl

DIOPT Version :10

Sequence 1:NP_524219.1 Gene:alpha-Cat / 40517 FlyBaseID:FBgn0010215 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_006518985.1 Gene:Vcl / 22330 MGIID:98927 Length:1134 Species:Mus musculus


Alignment Length:1151 Identity:238/1151 - (20%)
Similarity:425/1151 - (36%) Gaps:330/1151 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 TMSVEKTLEPLVLQVTTLV--NTKGPSKKKKGKS-KRASALVAAVEKATENFIQKGEQIAYENPD 90
            |.::|..|||:..|::.||  :.:|   :..||: ...:|.||||:.|..|.::.|::......|
Mouse     6 TRTIESILEPVAQQISHLVIMHEEG---EVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTED 67

  Fly    91 --ITQEMLTAVDEVKKTGDAMSIAAREFSEDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVH 153
              :.::|..|..:|:.....:..||:....||.|...|..::..:|.:||..:.||:..|..:|.
Mouse    68 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVR 132

  Fly   154 LLLKSLHIVEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAAKRQQELKDPQLRDDLAAARAM 218
            .:::....:.:.|...:...:.::|:...:..|....::.|...:|||||...:.|..|..:...
Mouse   133 KIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNT 197

  Fly   219 LKKHSTMLLTASKVYV-----RHPELDLAKVNRDF------------------------------ 248
            :|:...:|::|.|::|     ::..::.|..||:|                              
Mouse   198 VKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKD 262

  Fly   249 -----------------------------------ILKQVCDAVNTISDVAQGK----------- 267
                                               .::|:.|....:.::..||           
Mouse   263 TEAMKRALASIDSKLNQAKGWLRDPNASPGDAGEQAIRQILDEAGKVGELCAGKERREILGTCKM 327

  Fly   268 ----SSQPTDIYS-GAGELAAAL---DDFDEGI------------VMDPMTYSEKRSRQLL---- 308
                :.|..|:.: |.|....|:   ....:|:            .::.||.|::...:.:    
Mouse   328 LGQMTDQVADLRARGQGASPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQ 392

  Fly   309 ------------EERLESIISAAALMADADCTRDERRE---RIVAECNAVRQALQDL-------- 350
                        ||::...::.|..:|:. |...:.|:   |.:.|..|:...|.||        
Mouse   393 NWLADPNGGPEGEEQIRGALAEARKIAEL-CDDPKERDDILRSLGEIAALTSKLGDLRRQGKGDS 456

  Fly   351 ---------LSEYMSNMSQKDN---------------------------SP-----GLSRA---- 370
                     ::..:.|:..|.|                           :|     |:.:|    
Mouse   457 PEARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRG 521

  Fly   371 --------------------------IDQMCRK-------------------------TRDLRRQ 384
                                      :||:..:                         .:||:.|
Mouse   522 LVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKAQ 586

  Fly   385 LRKAVVDHVSDSFLETTTPLLDLIEAAKS-----GNEKKVREKSEIFTKHAEKLVEVANLVCSMS 444
            :::|:...|||.|.:||||:..|..||.:     ..|:...|::..|..|:.:|...|....::.
Mouse   587 MQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRLGATAEKAAAVG 651

  Fly   445 N-NEDGVKMVRYAAAQIESLCPQVINAASILTVRPNSKVAQENMTTYRQAWEVQVRILTEAVDDI 508
            . |:..|:.::.:......|.||||:||.||...|.::.|.|:..|.:..|...|..:|..||:.
Mouse   652 TANKSTVEGIQASVKTARELTPQVISAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEA 716

  Fly   509 TTIDDFLAVSENHILEDVNKCVMALQVGDARDLRATAGAIQGRSSRVCNVVEAEMDNYEPCIYTK 573
            ......|..||..|.:|::||.:|:.....:.|.|.|.:|..|::|:..|.:.|::|.|    ..
Mouse   717 IDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSE----DP 777

  Fly   574 RVLEAVKVLRDQVMMKFDQRVGAAVGALSNNSNKDVDENDFIDASRLVYDGVREIRRA------- 631
            :..||||...|::.......|..|.....|.|:..: :..|:|:...:...|.::|.|       
Mouse   778 KFREAVKAASDELSKTISPMVMDAKAVAGNISDPGL-QKSFLDSGYRILGAVAKVREAFQPQEPD 841

  Fly   632 -------VLMNRSSEDL---------------------DTDTEF----------EPV----EDLT 654
                   :...|.:::|                     :.|.||          :|:    ..|.
Mouse   842 FPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLH 906

  Fly   655 LETRSRSS----------------AHTGDQTVDEYP-DISGICTAREAMRKMTEEDKQKIAQQVE 702
            .|.|..||                |:..|.....:| |:.........:....:...|.|....:
Mouse   907 DEARKWSSKPGIPAAQVGIGVVAEANAADAVGFPFPSDMEDDYEPELLLMPSNQPVNQPILAAAQ 971

  Fly   703 LFRREKLTFDSEVAKWDDTGNDIIFLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGT 767
            ...|       |..||...|||||..||.|.::|.||:...||....|..:  |..||.|::|..
Mouse   972 SLHR-------EATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASD 1027

  Fly   768 KLDKLTREIAEQCPESSTKKDLLAYLQRIALYCHQIQITSKVKADV---QNISGELIVSGLDSAT 829
            ::.:|.:|:|:||.:...:.:||...:||.....|::|.|.|||.:   .|||.|    ..:.||
Mouse  1028 EVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDE----ESEQAT 1088

  Fly   830 S-LIQAAKNLMNAVVLTVKYSYVASTKYTRQGTVSSPIVVWKMKAP 874
            . |:..|:|||.:|..||:.:..||.|..   |.:...:.|..|.|
Mouse  1089 EMLVHNAQNLMQSVKETVREAEAASIKIR---TDAGFTLRWVRKTP 1131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-CatNP_524219.1 Vinculin 26..877 CDD:460040 238/1151 (21%)
VclXP_006518985.1 Vinculin 3..1134 CDD:460040 238/1151 (21%)

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