DRSC/TRiP Functional Genomics Resources

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Protein Alignment nrm and sns

DIOPT Version :9

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1794 Identity:383/1794 - (21%)
Similarity:599/1794 - (33%) Gaps:545/1794 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LVLVLCLALVDSSTAQVDTTISQQ------------ESQSVVLPCPVDAEKCGKLHSLNWFKGDD 81
            |.|:..||::..::|.|.:...||            |....::.|.| |...|   ::.|.|  |
  Fly    49 LQLLRLLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEV-ANVAG---AVQWTK--D 107

  Fly    82 RIAAMLLGDSNVTSVNKEFDERVTVEQNPYRLVIKDLKIADEDIYLCDTTFFIPEETCDNFNGYR 146
            ..|   ||.|.|......:......:|..|.|.|.:..|.|:..|.|.    :.....::.....
  Fly   108 GFA---LGFSAVIPGFPRYSVLGDRKQGIYNLRISNASINDDADYQCQ----VGPARLNSAIRAN 165

  Fly   147 IELRVLVPPTEVVILDAKGDRIKNGSVVGPMQERQSLKATCTVRNTRPQPEVSWFRGTKRLTTYS 211
            .:|.|:.||..:.|   ||  ..:.|.| .::|.|.|:..|.|.|.:|..::.|:||.   ..|.
  Fly   166 AKLTVISPPASIEI---KG--YSHNSKV-EVRENQDLQLKCIVANAKPAAQIVWYRGN---VEYK 221

  Fly   212 P--THDLVD----GLYTSTLELDWTLSREDLAQDIECRVKSAAIQNVTVTKFSVDLQV----RPT 266
            |  ..|.|:    ..:|:|..|......:|...:..|:.:..|:......:.:|.|.|    .|.
  Fly   222 PEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLYPPGPP 286

  Fly   267 SIDINGVKHHTVQGSKVVLTCDIHGARPAVNLTWYNTTTII-----SSG---ENEITEVRSKSLE 323
            .|:.........:|..|.|.|...|..|...|.||...:.|     :||   ||..|        
  Fly   287 YIEGYSAGETLRRGQTVELMCRSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYT-------- 343

  Fly   324 KSDGTFHTQSELIFNATRFENDRVFRCEAENIVLQINREKPISSALTLEVLYPP--VVKVSPSAI 386
                         |.|...:|...|||||.|::.|    .|:.:.:.|.||:.|  |..:.|:  
  Fly   344 -------------FTAEAGDNKARFRCEASNVMSQ----NPLKAEVELSVLFAPTHVTVMGPT-- 389

  Fly   387 TANTSEIVLLNCEYF-ANPASLTQVEWYRNDILV-NVNDTT--HYKGG--NSENVALVIKSTEKE 445
            .|...:||.|.|... :||.:  :::|......| |....|  ..:||  .:.|:..|::..::.
  Fly   390 EARVGDIVPLTCTTAPSNPPA--EIKWMVGGRQVRNATSKTIVSPEGGWTTTSNITAVVEPNKRS 452

  Fly   446 DI---GNYSCQLSNNIGKGTSDQKINLDVQYAPTVEIL-------MIPEGPVKESDESNVTLFCN 500
            .:   ...:.||:.|:   .|...||  |.|.|...::       :||.|.|::       |.|.
  Fly   453 LVVICHGLNMQLTENV---VSTHTIN--VLYPPAPPLISGYMEGQIIPAGSVQK-------LLCV 505

  Fly   501 VLDANPSVLTKVRWYANS------------------TLLKELPDCEETREDLCHIDPSKLLLESI 547
            ....||  |..:.||.|.                  |:|..:.|.:.                  
  Fly   506 SSGGNP--LATLTWYKNDKRINSVIRAADKSVSAEITILANVSDNQA------------------ 550

  Fly   548 GRGFFYNYSCEGFNAAGWGPRSEDKELLVHYEPGPAALSHFPLVAVKKKSVTFSCSVDDPGFPES 612
                  .|.||..|:|...|..:...|.||:.|....:...|.........|..|.......|. 
  Fly   551 ------QYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPA- 608

  Fly   613 NRFRWLRGGRGPLQDIVTKD----WTVEPVGLDSRTN---------YSCYAYNEG-GKGVMATVN 663
             :..|.:.|. |::.|....    |......|:.|.|         |:|.:.||. .:.....|:
  Fly   609 -KLSWWKDGI-PIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSAHEAVS 671

  Fly   664 LEVHAPPFFIKNLPPYT---GILHSSPNATLTCRIECVPRCDISWQKDGVPIERN-DSRYFIKEK 724
            |:|...|.|:.  ||.:   |:...|...:|..|....| ....|.|||..|.:: |.|.|    
  Fly   672 LDVLYRPKFVP--PPSSTAVGVEGESLQVSLQTRANPTP-VTYKWTKDGTTIPQDGDHRIF---- 729

  Fly   725 YMDASPATGDFESMLSVLHFNMPNWPDSKFNIEADNAN-YSCVSTGNIVGGSIRSRTYFGIEYAP 788
                  |.|      ..|:|.         .:..|:|. ||| |..|..||:..:.|.. :||..
  Fly   730 ------ADG------GSLNFT---------RLHRDDAGIYSC-SASNSQGGATLNITVV-VEYGT 771

  Fly   789 ENTTVSENIVYVQEDTIPGR---VICKSRANP--EPSYKW--------IFKNETIANGNALIINT 840
            ...:||||||     ..||.   :.|.....|  |...||        :..:.|.|||.:.:...
  Fly   772 TIKSVSENIV-----VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIK 831

  Fly   841 AMNRNDDGTYTCLAYNKHGSSIAKTVIK-VQFKPRCEIERQEIDDQDTLI-------------CT 891
            ...|.|.|.:.|:|.|:..:...:.::. |:|.|       ||....||:             |.
  Fly   832 DAKREDVGNFRCVADNRVDNPTNRDILLIVKFAP-------EIAKTPTLLRAASGTGERGRLPCR 889

  Fly   892 AYGNPIEADFSWSIKTENETDENLGSGKK----ENSVEKSFY--------ILQTDYAISRTYRCV 944
            |.|:| :..|.|   .:::.|..:....|    |..::...|        :...||.   .|.||
  Fly   890 AQGSP-KPQFIW---RQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYG---AYECV 947

  Fly   945 ANNTVGYG-PFCEIEVAEQ------------------LAWWQLWEKNTLIILVAAILGLLLTVIV 990
            |.|.:|.. ....:|:..|                  |||...::.           ||..:..|
  Fly   948 ARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDG-----------GLKASYRV 1001

  Fly   991 ICCIIICICRRR---RRQDKYLTEVP-----------INSIQ--SALS-DQLDMSRAGRNLSTQD 1038
                     |.|   |.|.||:..:|           :|::.  |.:| ::|..|....:|:..:
  Fly  1002 ---------RYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAE 1057

  Fly  1039 KCTAILP-NPSSSRFIGSAPKSPPRWPI--RPGVMLHVSSNTKENLTVNRMTV--------KPNV 1092
            ...|..| :|:||  :|..|.:..:.|:  ..|::|   ......:.|..:.|        |.|.
  Fly  1058 TKEAPPPSHPASS--LGGGPPTTSQTPLGGTSGMLL---VGVGAGIVVVLLNVFVIGCCLHKRNE 1117

  Fly  1093 SGNRGDMSQLSAQLSAALNGSRDNSDGTILTEISAVSGENEASNLSIL-------------EVTN 1144
            ...:..:..:.|:|:.    ...|:...::..||..:......|.|::             |.||
  Fly  1118 KRLKRGLELMPAELTE----DSSNTPNLVIIGISLAAFGFLLVNASLVAWFFVHQRRKKVAETTN 1178

  Fly  1145 R--KKATV----PSTIRNVSTAEGEIISSKTHSAGHIALDHVWSLIFKKSDDRTRDSQRSHVGLL 1203
            :  |.||:    ||:..:  |..||.:||                :.:||:              
  Fly  1179 QPAKTATIEMYAPSSYND--TVTGETLSS----------------VSEKSE-------------- 1211

  Fly  1204 QTFWRGLGAKESTSGFESQHRLKGIRCSGSVTYKKAKETVHSTSDAASNGESSLTK---RPNNCQ 1265
                     ..|..|......:..:|...:.||     .|..:.......:...|.   .|||. 
  Fly  1212 ---------SYSNEGSSQPEYIDEVRKKAASTY-----LVEGSDMPPPRYQKDGTLPVIYPNNV- 1261

  Fly  1266 PSVSIQLQSNMEEKTSKFVLKDERNNSSTEVENIPCNMVPSITRGSSIESPQRPAPSSLPLKNFL 1330
                          .:...|...|:|:.:...::..:....|::|..|.||. |||.  |..::.
  Fly  1262 --------------VNACTLPHPRHNNGSAAIHMTRDDQMLISKGVYIPSPS-PAPP--PDGSYY 1309

  Fly  1331 NVTSWGCSGNSTMVPSHILANEQIHDKSSSLREPLTEPGEY--------ENLPFHGLQTAPNKFS 1387
            |:.|                     |:..|.     .|.||        :.:|...||  |...:
  Fly  1310 NMNS---------------------DRYLSY-----PPMEYPAALDFTAQPMPMAHLQ--PMTVT 1346

  Fly  1388 TTPTN----FNNNTNAVRVAQRPKELIGNINQPSVGLYQ-------------DCQATHD--PLLY 1433
            :..||    ...|.:...||.....|...|.:..||:.|             ..|..||  |:..
  Fly  1347 SLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPDVTHHTSTVGGSPMQMLHDLHPVNL 1411

  Fly  1434 HQKYFCDQDALNDQRSQYT-TMHRPPNNVQYNQSLFKPDSNLQDQHNLSNCISKSYTEYYQQHQR 1497
            ..........||......| |:.|.|:.:     |..|:.|.|.|            :..||.|:
  Fly  1412 SASTLTTSTTLNGSLPTATATLPRQPHGI-----LKDPNRNKQQQ------------QQQQQQQQ 1459

  Fly  1498 SEKLQ----------------MIFPQGASKELN----SNSLCNTDHTPHSALVNINLRKYDRTEE 1542
            .::||                :..|.|:.:.||    |..|.|      :.|:..|  .:|.|..
  Fly  1460 QQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPASGGLGN------NLLMTTN--AFDPTTV 1516

  Fly  1543 ELLGNMPRARHRKGTLNVENKFYSLKHLGGIEVRNQDLD 1581
            .|                 :.|.::...|||.|...|.|
  Fly  1517 GL-----------------SSFGAVSQAGGIPVAYTDAD 1538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 Ig 44..152 CDD:299845 25/119 (21%)
Ig 176..248 CDD:299845 19/77 (25%)
Ig 277..354 CDD:299845 23/84 (27%)
IG_like 383..463 CDD:214653 19/88 (22%)
Ig 394..463 CDD:143165 16/77 (21%)
Ig_3 585..652 CDD:290638 14/79 (18%)
Ig 685..>719 CDD:299845 10/34 (29%)
IG_like 788..869 CDD:214653 23/94 (24%)
Ig <811..869 CDD:299845 15/68 (22%)
snsNP_001036532.1 I-set 73..170 CDD:254352 22/109 (20%)
Ig 76..155 CDD:299845 21/91 (23%)
IG_like 186..279 CDD:214653 24/96 (25%)
Ig 197..279 CDD:299845 19/84 (23%)
IG_like 296..376 CDD:214653 27/104 (26%)
Ig 300..361 CDD:299845 23/81 (28%)
Ig 380..454 CDD:299845 18/77 (23%)
IG_like 490..573 CDD:214653 22/115 (19%)
Ig 501..560 CDD:299845 15/91 (16%)
Ig 584..666 CDD:299845 16/84 (19%)
IG_like 585..666 CDD:214653 16/83 (19%)
I-set 678..767 CDD:254352 31/118 (26%)
IGc2 692..757 CDD:197706 23/91 (25%)
Ig 788..849 CDD:143165 15/60 (25%)
Ig 885..960 CDD:143165 18/81 (22%)
FN3 967..1051 CDD:238020 18/103 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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