DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nrm and sns

DIOPT Version :10

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1794 Identity:383/1794 - (21%)
Similarity:599/1794 - (33%) Gaps:545/1794 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LVLVLCLALVDSSTAQVDTTISQQ------------ESQSVVLPCPVDAEKCGKLHSLNWFKGDD 81
            |.|:..||::..::|.|.:...||            |....::.|.| |...|   ::.|.|  |
  Fly    49 LQLLRLLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEV-ANVAG---AVQWTK--D 107

  Fly    82 RIAAMLLGDSNVTSVNKEFDERVTVEQNPYRLVIKDLKIADEDIYLCDTTFFIPEETCDNFNGYR 146
            ..|   ||.|.|......:......:|..|.|.|.:..|.|:..|.|.    :.....::.....
  Fly   108 GFA---LGFSAVIPGFPRYSVLGDRKQGIYNLRISNASINDDADYQCQ----VGPARLNSAIRAN 165

  Fly   147 IELRVLVPPTEVVILDAKGDRIKNGSVVGPMQERQSLKATCTVRNTRPQPEVSWFRGTKRLTTYS 211
            .:|.|:.||..:.|   ||  ..:.|.| .::|.|.|:..|.|.|.:|..::.|:||.   ..|.
  Fly   166 AKLTVISPPASIEI---KG--YSHNSKV-EVRENQDLQLKCIVANAKPAAQIVWYRGN---VEYK 221

  Fly   212 P--THDLVD----GLYTSTLELDWTLSREDLAQDIECRVKSAAIQNVTVTKFSVDLQV----RPT 266
            |  ..|.|:    ..:|:|..|......:|...:..|:.:..|:......:.:|.|.|    .|.
  Fly   222 PEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLYPPGPP 286

  Fly   267 SIDINGVKHHTVQGSKVVLTCDIHGARPAVNLTWYNTTTII-----SSG---ENEITEVRSKSLE 323
            .|:.........:|..|.|.|...|..|...|.||...:.|     :||   ||..|        
  Fly   287 YIEGYSAGETLRRGQTVELMCRSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYT-------- 343

  Fly   324 KSDGTFHTQSELIFNATRFENDRVFRCEAENIVLQINREKPISSALTLEVLYPP--VVKVSPSAI 386
                         |.|...:|...|||||.|::.|    .|:.:.:.|.||:.|  |..:.|:  
  Fly   344 -------------FTAEAGDNKARFRCEASNVMSQ----NPLKAEVELSVLFAPTHVTVMGPT-- 389

  Fly   387 TANTSEIVLLNCEYF-ANPASLTQVEWYRNDILV-NVNDTT--HYKGG--NSENVALVIKSTEKE 445
            .|...:||.|.|... :||.:  :::|......| |....|  ..:||  .:.|:..|::..::.
  Fly   390 EARVGDIVPLTCTTAPSNPPA--EIKWMVGGRQVRNATSKTIVSPEGGWTTTSNITAVVEPNKRS 452

  Fly   446 DI---GNYSCQLSNNIGKGTSDQKINLDVQYAPTVEIL-------MIPEGPVKESDESNVTLFCN 500
            .:   ...:.||:.|:   .|...||  |.|.|...::       :||.|.|::       |.|.
  Fly   453 LVVICHGLNMQLTENV---VSTHTIN--VLYPPAPPLISGYMEGQIIPAGSVQK-------LLCV 505

  Fly   501 VLDANPSVLTKVRWYANS------------------TLLKELPDCEETREDLCHIDPSKLLLESI 547
            ....||  |..:.||.|.                  |:|..:.|.:.                  
  Fly   506 SSGGNP--LATLTWYKNDKRINSVIRAADKSVSAEITILANVSDNQA------------------ 550

  Fly   548 GRGFFYNYSCEGFNAAGWGPRSEDKELLVHYEPGPAALSHFPLVAVKKKSVTFSCSVDDPGFPES 612
                  .|.||..|:|...|..:...|.||:.|....:...|.........|..|.......|. 
  Fly   551 ------QYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPA- 608

  Fly   613 NRFRWLRGGRGPLQDIVTKD----WTVEPVGLDSRTN---------YSCYAYNEG-GKGVMATVN 663
             :..|.:.|. |::.|....    |......|:.|.|         |:|.:.||. .:.....|:
  Fly   609 -KLSWWKDGI-PIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSAHEAVS 671

  Fly   664 LEVHAPPFFIKNLPPYT---GILHSSPNATLTCRIECVPRCDISWQKDGVPIERN-DSRYFIKEK 724
            |:|...|.|:.  ||.:   |:...|...:|..|....| ....|.|||..|.:: |.|.|    
  Fly   672 LDVLYRPKFVP--PPSSTAVGVEGESLQVSLQTRANPTP-VTYKWTKDGTTIPQDGDHRIF---- 729

  Fly   725 YMDASPATGDFESMLSVLHFNMPNWPDSKFNIEADNAN-YSCVSTGNIVGGSIRSRTYFGIEYAP 788
                  |.|      ..|:|.         .:..|:|. ||| |..|..||:..:.|.. :||..
  Fly   730 ------ADG------GSLNFT---------RLHRDDAGIYSC-SASNSQGGATLNITVV-VEYGT 771

  Fly   789 ENTTVSENIVYVQEDTIPGR---VICKSRANP--EPSYKW--------IFKNETIANGNALIINT 840
            ...:||||||     ..||.   :.|.....|  |...||        :..:.|.|||.:.:...
  Fly   772 TIKSVSENIV-----VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIK 831

  Fly   841 AMNRNDDGTYTCLAYNKHGSSIAKTVIK-VQFKPRCEIERQEIDDQDTLI-------------CT 891
            ...|.|.|.:.|:|.|:..:...:.::. |:|.|       ||....||:             |.
  Fly   832 DAKREDVGNFRCVADNRVDNPTNRDILLIVKFAP-------EIAKTPTLLRAASGTGERGRLPCR 889

  Fly   892 AYGNPIEADFSWSIKTENETDENLGSGKK----ENSVEKSFY--------ILQTDYAISRTYRCV 944
            |.|:| :..|.|   .:::.|..:....|    |..::...|        :...||.   .|.||
  Fly   890 AQGSP-KPQFIW---RQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYG---AYECV 947

  Fly   945 ANNTVGYG-PFCEIEVAEQ------------------LAWWQLWEKNTLIILVAAILGLLLTVIV 990
            |.|.:|.. ....:|:..|                  |||...::.           ||..:..|
  Fly   948 ARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDG-----------GLKASYRV 1001

  Fly   991 ICCIIICICRRR---RRQDKYLTEVP-----------INSIQ--SALS-DQLDMSRAGRNLSTQD 1038
                     |.|   |.|.||:..:|           :|::.  |.:| ::|..|....:|:..:
  Fly  1002 ---------RYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAE 1057

  Fly  1039 KCTAILP-NPSSSRFIGSAPKSPPRWPI--RPGVMLHVSSNTKENLTVNRMTV--------KPNV 1092
            ...|..| :|:||  :|..|.:..:.|:  ..|::|   ......:.|..:.|        |.|.
  Fly  1058 TKEAPPPSHPASS--LGGGPPTTSQTPLGGTSGMLL---VGVGAGIVVVLLNVFVIGCCLHKRNE 1117

  Fly  1093 SGNRGDMSQLSAQLSAALNGSRDNSDGTILTEISAVSGENEASNLSIL-------------EVTN 1144
            ...:..:..:.|:|:.    ...|:...::..||..:......|.|::             |.||
  Fly  1118 KRLKRGLELMPAELTE----DSSNTPNLVIIGISLAAFGFLLVNASLVAWFFVHQRRKKVAETTN 1178

  Fly  1145 R--KKATV----PSTIRNVSTAEGEIISSKTHSAGHIALDHVWSLIFKKSDDRTRDSQRSHVGLL 1203
            :  |.||:    ||:..:  |..||.:||                :.:||:              
  Fly  1179 QPAKTATIEMYAPSSYND--TVTGETLSS----------------VSEKSE-------------- 1211

  Fly  1204 QTFWRGLGAKESTSGFESQHRLKGIRCSGSVTYKKAKETVHSTSDAASNGESSLTK---RPNNCQ 1265
                     ..|..|......:..:|...:.||     .|..:.......:...|.   .|||. 
  Fly  1212 ---------SYSNEGSSQPEYIDEVRKKAASTY-----LVEGSDMPPPRYQKDGTLPVIYPNNV- 1261

  Fly  1266 PSVSIQLQSNMEEKTSKFVLKDERNNSSTEVENIPCNMVPSITRGSSIESPQRPAPSSLPLKNFL 1330
                          .:...|...|:|:.:...::..:....|::|..|.||. |||.  |..::.
  Fly  1262 --------------VNACTLPHPRHNNGSAAIHMTRDDQMLISKGVYIPSPS-PAPP--PDGSYY 1309

  Fly  1331 NVTSWGCSGNSTMVPSHILANEQIHDKSSSLREPLTEPGEY--------ENLPFHGLQTAPNKFS 1387
            |:.|                     |:..|.     .|.||        :.:|...||  |...:
  Fly  1310 NMNS---------------------DRYLSY-----PPMEYPAALDFTAQPMPMAHLQ--PMTVT 1346

  Fly  1388 TTPTN----FNNNTNAVRVAQRPKELIGNINQPSVGLYQ-------------DCQATHD--PLLY 1433
            :..||    ...|.:...||.....|...|.:..||:.|             ..|..||  |:..
  Fly  1347 SLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPDVTHHTSTVGGSPMQMLHDLHPVNL 1411

  Fly  1434 HQKYFCDQDALNDQRSQYT-TMHRPPNNVQYNQSLFKPDSNLQDQHNLSNCISKSYTEYYQQHQR 1497
            ..........||......| |:.|.|:.:     |..|:.|.|.|            :..||.|:
  Fly  1412 SASTLTTSTTLNGSLPTATATLPRQPHGI-----LKDPNRNKQQQ------------QQQQQQQQ 1459

  Fly  1498 SEKLQ----------------MIFPQGASKELN----SNSLCNTDHTPHSALVNINLRKYDRTEE 1542
            .::||                :..|.|:.:.||    |..|.|      :.|:..|  .:|.|..
  Fly  1460 QQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPASGGLGN------NLLMTTN--AFDPTTV 1516

  Fly  1543 ELLGNMPRARHRKGTLNVENKFYSLKHLGGIEVRNQDLD 1581
            .|                 :.|.::...|||.|...|.|
  Fly  1517 GL-----------------SSFGAVSQAGGIPVAYTDAD 1538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 V-set 44..152 CDD:462230 25/119 (21%)
Ig strand B 183..187 CDD:409353 1/3 (33%)
Ig <185..248 CDD:472250 16/68 (24%)
Ig strand C 197..201 CDD:409353 0/3 (0%)
Ig strand E 225..229 CDD:409353 1/3 (33%)
Ig strand F 239..244 CDD:409353 1/4 (25%)
Ig strand G 253..256 CDD:409353 0/2 (0%)
Ig 277..354 CDD:472250 23/84 (27%)
Ig strand B 283..287 CDD:409353 2/3 (67%)
Ig strand C 297..301 CDD:409353 1/3 (33%)
Ig strand E 333..337 CDD:409353 0/3 (0%)
Ig strand F 347..352 CDD:409353 3/4 (75%)
Ig_3 376..456 CDD:464046 20/90 (22%)
Ig 676..779 CDD:472250 28/107 (26%)
Ig strand B 689..693 CDD:409353 1/3 (33%)
Ig strand C 702..706 CDD:409353 0/3 (0%)
Ig strand E 734..741 CDD:409353 0/6 (0%)
Ig strand F 762..767 CDD:409353 3/5 (60%)
Ig <811..869 CDD:472250 15/68 (22%)
Ig strand C 820..824 CDD:143205 2/11 (18%)
Ig strand F 849..854 CDD:143205 1/4 (25%)
Ig strand G 862..865 CDD:143205 0/2 (0%)
PTZ00112 1747..>1940 CDD:240274
snsNP_001036532.1 Ig 73..170 CDD:472250 22/109 (20%)
Ig strand B 89..93 CDD:409559 0/3 (0%)
Ig strand C 101..105 CDD:409559 0/3 (0%)
Ig strand E 130..138 CDD:409559 3/7 (43%)
Ig strand F 148..153 CDD:409559 2/8 (25%)
Ig 173..279 CDD:472250 29/114 (25%)
Ig strand B 196..200 CDD:409418 1/3 (33%)
Ig strand C 210..214 CDD:409418 0/3 (0%)
Ig strand E 241..245 CDD:409418 1/3 (33%)
Ig strand F 255..260 CDD:409418 1/4 (25%)
Ig strand G 272..275 CDD:409418 0/2 (0%)
Ig_3 285..361 CDD:464046 25/96 (26%)
Ig 377..>457 CDD:472250 19/83 (23%)
Ig strand B 397..401 CDD:409418 2/3 (67%)
Ig strand C 411..415 CDD:409418 0/3 (0%)
Ig strand E 440..444 CDD:409418 1/3 (33%)
Ig 477..560 CDD:472250 21/115 (18%)
Ig strand B 499..504 CDD:409418 2/11 (18%)
Ig strand C 514..518 CDD:409418 0/3 (0%)
Ig strand E 537..541 CDD:409418 0/3 (0%)
Ig strand F 551..556 CDD:409418 2/4 (50%)
Ig 584..666 CDD:472250 16/84 (19%)
Ig strand B 595..599 CDD:409416 1/3 (33%)
Ig strand C 609..613 CDD:409416 0/3 (0%)
Ig strand E 636..642 CDD:409416 1/5 (20%)
Ig strand F 652..657 CDD:409416 2/4 (50%)
Ig strand G 667..670 CDD:409416 0/2 (0%)
Ig 678..767 CDD:472250 31/118 (26%)
Ig strand B 696..700 CDD:409353 0/3 (0%)
Ig strand C 710..714 CDD:409353 0/3 (0%)
Ig strand E 733..737 CDD:409353 1/3 (33%)
Ig strand F 747..752 CDD:409353 3/5 (60%)
Ig_3 772..847 CDD:464046 22/79 (28%)
Ig 881..963 CDD:472250 18/88 (20%)
Ig strand B 885..888 CDD:409353 0/2 (0%)
Ig strand C 897..901 CDD:409353 2/6 (33%)
Ig strand E 929..933 CDD:409353 0/3 (0%)
Ig strand F 943..948 CDD:409353 2/4 (50%)
FN3 967..1051 CDD:238020 18/103 (17%)
Blue background indicates that the domain is not in the aligned region.

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