DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nrm and side-VIII

DIOPT Version :9

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_001097382.2 Gene:side-VIII / 37310 FlyBaseID:FBgn0086604 Length:1201 Species:Drosophila melanogaster


Alignment Length:1344 Identity:280/1344 - (20%)
Similarity:469/1344 - (34%) Gaps:362/1344 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SLSLVLVLCLALVD--------------SSTAQVDTTISQQE------------SQSVV-----L 59
            |.||.|.|||.::.              ||:..:...|.::.            |:|::     |
  Fly     6 SRSLFLPLCLLVLSALNGPAAAASRVRVSSSTTMTRNIEEENALLLLLAGPPVLSESIMGTVGRL 70

  Fly    60 PC----PVDAEKCGKLHSLNWFKGDDR--IAAMLLGDSNVTS----VNKEFDERVT--VEQNPYR 112
            ||    |:..:   ::..:.|:|...:  |.::...|||...    .::.:.||::  ||.....
  Fly    71 PCNVTPPIYED---RVALVIWYKVGLKTPIYSVDTRDSNFAQGTHWSDETYRERLSFHVEGRAGT 132

  Fly   113 LVIKDLKIADEDIYLCDTTFFIPEETCDNFNGYRIELRVLVPPTEVVILDAKGDRIKNGSVVGPM 177
            |.||.....|...|.|...|    :.....|. ::.|.|::||..|:|||:||..|:: ..:||.
  Fly   133 LTIKSTTEDDTGEYRCRVDF----QKSPTRNS-KVNLTVIIPPESVIILDSKGVTIED-HTLGPY 191

  Fly   178 QERQSLKATCTVRNTRPQPEVSWFRGTKRLTTYSPTHDLVDGLYTSTLELDWTLSREDLAQDIEC 242
            .|...:..||.....||||.|:|..|.......|....|.:....:||.|. .|.|.:|...:.|
  Fly   192 NEGSGINITCVAIGGRPQPRVTWLHGNTVYKNASVGQPLSERRVGNTLSLA-RLERRNLHMQLTC 255

  Fly   243 RVKSAAIQNVTVTKFSVDLQVRPTSIDINGVKHHTVQGSKVVLTCDIHGARPAVNLTWYNTTTII 307
            |.::..:....::...:|:.:||..:.:.|.......|:...|:|.:.|||||..:||:..:|.:
  Fly   256 RAENNNLTTPIISSVVLDMNLRPLIVKLQGENRALSAGNSYQLSCVVIGARPAPTITWWKGSTPM 320

  Fly   308 SSGENEITEVRSKSLEKSDGTFHTQSELIFNATRFENDRVFRCEAENIVLQINREKPISSALTLE 372
            .:         :..:...||.. |.|.|.|..|..:..:...|.||..::.   |..:.....|:
  Fly   321 KN---------THEIATPDGNL-TTSVLTFTPTIDDRGKFLSCRAEQSMIP---ESGMEDGWKLD 372

  Fly   373 VLYPPVVKVSPSAITANTS----EIVLLNCEYFANPASLTQVEWYRNDILVNVNDTTHYKGGNSE 433
            :.:.|||.:.....:.|::    ..|...|...:|| .:.:|.|..|..::..|..   :|....
  Fly   373 IYHIPVVSLELGTNSLNSTLREGIDVFFECNIKSNP-WIYEVSWRHNGKILTNNPA---EGIAVS 433

  Fly   434 NVALVIKSTEKEDIGNYSCQLSNNIGKGTSDQKINLDVQYAPTVEILMIPEGPVKESD--ESNVT 496
            |.:||:::..:...|.|:|..||..|.|.|: .:.||:::||...    |...:..|.  ...|.
  Fly   434 NQSLVLQNASRARSGIYTCVGSNREGDGESN-PVQLDIRFAPVCR----PRQRLSYSSGRHETVK 493

  Fly   497 LFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHIDPSKLLLESIGRGFFYNYSCEGFN 561
            :.|.: ||||:..|.| |..|:           |:.:...|..|::.::. ||...: |:....|
  Fly   494 VACEI-DANPAEATYV-WKFNA-----------TQGETVDIPASQVAVDR-GRSIAH-YTPMTEN 543

  Fly   562 AAG----W-----GPRSEDKELLVHYEPGPAALSHFPLVAVKKKSVTFSCSV---DDPGFPESNR 614
            ..|    |     |.:||           |...:.||   ..:.....:|:|   ...||    :
  Fly   544 DYGTLLCWATNEIGDQSE-----------PCVYTIFP---AGEPDPLLNCTVLNQTSTGF----Q 590

  Fly   615 FRWLRGGRGPL-QDIV----------------TKDWTVEPVGLDSRTNYSCYAYNEGGKGVMATV 662
            ...:.|..|.| ||.:                :|....|..||.....|:.:......||.....
  Fly   591 IECIEGFNGGLQQDFIMEVYMNGTTRHPKISKSKRPYFEVSGLVPGMGYNVFLIANNSKGRSNAT 655

  Fly   663 NLEVHA---PP------FFIKNL----PPYTGILHSSPNATLTCRIECVPRCD----------IS 704
            .|:|:.   |.      .|.|:.    |.||     ...||.|...:||  ||          ||
  Fly   656 ILQVYTLKDPEKQTVKITFTKSFQGLRPAYT-----KTKATATTTSDCV--CDEDEFLNLGKGIS 713

  Fly   705 WQKDGVPIERNDSRYFIKEKYMDASPATGDFESMLSVLHFNMPNWPDSKFNIE------------ 757
             ..:|...::.:      :..:..:|...|....|.:|    .....|.|.:.            
  Fly   714 -HDEGTDADQQE------DLSLAYAPVIEDIRPFLGIL----AGIVGSIFLVALIIVIVVRVRGS 767

  Fly   758 --ADNANYSCVSTGNIVGGSIRSRTYFGIEYAPENTTVSENIVYVQEDTIPGRVICKSRANPEPS 820
              .|..|||...:|  |||                               .|.|           
  Fly   768 SGRDRNNYSHPGSG--VGG-------------------------------VGGV----------- 788

  Fly   821 YKWIFKNETIANGNAL------IINTAMNRNDDGTYTCLAYNKHGSSIAKTV-----IKVQFKPR 874
                  ..|..||:.:      :..|..|.|  |:...||.|.:||.:..|:     ..||...|
  Fly   789 ------GGTTGNGSGMGGGGGGVGGTTANGN--GSLGLLASNNNGSLVIGTLGHNGGQSVQDMHR 845

  Fly   875 -----CEIERQEID--DQDTLICTAYGNPIEADFSWSIKTENETDENLGSGKKENSVEKSFYILQ 932
                 |.: ...:|  |::..|....|:  :.|..|:.|....|.......::...:....|   
  Fly   846 IGRETCHV-TSSLDSIDKNPDIIPQDGH--DLDDEWTTKGHGRTYATAAMAEQNAVITSGTY--- 904

  Fly   933 TDYAISRTYRCVANNTV---GYGPFCE----IEVAEQLAW--------WQLWEKNTLII------ 976
             |: :..||..|...|.   |:|.:.:    |.|::..|:        .|..:|..|..      
  Fly   905 -DH-LMPTYAVVDKKTAPPPGHGQYIQYNTLIPVSKMGAYANQQQQLQQQPQQKTELSYSELSAP 967

  Fly   977 LVAAILGLLLTVIVICCIIICICRR----RRRQDKYLTEVPINSIQSALSDQLDMSRAGR----- 1032
            ||:..:| :..:...|...:....|    :|.:....::|.:......|:|....:.:||     
  Fly   968 LVSGPVG-VQRMAPYCSATLGRPGRQAELKRAEPNIYSQVNVMMDDEILADLQAATASGRSYVAG 1031

  Fly  1033 ----------NLSTQDKCTAI------LPNPSSSRFIGS------------------APKSPPRW 1063
                      ||..|...|.|      :|..|:|...|:                  :|..||  
  Fly  1032 AVVDNVGGAPNLYVQGYATRIDLAHHPMPMYSTSPMFGTNSTITGVTMSHPSQLATFSPTPPP-- 1094

  Fly  1064 PIRPGVMLHVSSNTKENLTVNRMTVKPNVSGN------RGDMSQLSAQLSAALNGSRDNSDGTIL 1122
            ||....|:.......:.:|...:....:...:      .....|...||:||..|     :|:|:
  Fly  1095 PIFTHSMVTTGDGLLQPVTCMGLVATSSAGASVPGPVPLAPQQQQQQQLTAANGG-----NGSIV 1154

  Fly  1123 TEISAVSGENEASNLSILEVTNRKKATVPSTIRNVSTAEGEIIS 1166
            ....::.| ::.....:|:       |||..:.:....|..:|:
  Fly  1155 GMGMSLYG-SDVGKPQLLK-------TVPEEVHHQLNGEDILIA 1190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 Ig 44..152 CDD:299845 26/136 (19%)
Ig 176..248 CDD:299845 21/71 (30%)
Ig 277..354 CDD:299845 20/76 (26%)
IG_like 383..463 CDD:214653 20/83 (24%)
Ig 394..463 CDD:143165 19/68 (28%)
Ig_3 585..652 CDD:290638 16/86 (19%)
Ig 685..>719 CDD:299845 10/43 (23%)
IG_like 788..869 CDD:214653 15/91 (16%)
Ig <811..869 CDD:299845 13/68 (19%)
side-VIIINP_001097382.2 Ig 55..166 CDD:299845 25/118 (21%)
IG_like 60..166 CDD:214653 25/113 (22%)
Ig 182..266 CDD:299845 23/85 (27%)
Ig 296..373 CDD:299845 22/89 (25%)
IG_like 389..464 CDD:214653 20/78 (26%)
IGc2 394..459 CDD:197706 17/68 (25%)
Ig_3 490..554 CDD:290638 19/78 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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