DRSC/TRiP Functional Genomics Resources

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Protein Alignment nrm and Psg19

DIOPT Version :9

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_036094.2 Gene:Psg19 / 26439 MGIID:1347252 Length:475 Species:Mus musculus


Alignment Length:553 Identity:109/553 - (19%)
Similarity:192/553 - (34%) Gaps:162/553 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 PISSALTLEVLYPPVVKVSPSAITANTSEIVLLNCEYFANPASLTQVEWYRNDI-------LVNV 421
            ||::.:|:|.:.|.:|:          .|.|||..:..  |.:|....|||..|       |.::
Mouse    31 PITARVTIESVPPKLVE----------GENVLLRVDNL--PENLRVFAWYRGVIKFKLGIALYSL 83

  Fly   422 NDTTHYKGGN-------SENVALVIKSTEKEDIGNYSCQLSNNIGKGTSDQKINLDVQYAPTV-- 477
            :..|...|..       ..|.:|.|:|..:||.|.|:.|..:..||..|:..:.|.|..:..:  
Mouse    84 DYNTSVTGPEHSGRETLHSNGSLWIQSATREDTGYYTFQTISKNGKVVSNTSMFLQVYSSLFICG 148

  Fly   478 -----EILMIPEGPVKESDESNVTLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHI 537
                 .:|.|...|...::..:|.|..:.|   |..|..:.||...|:..::        ::...
Mouse   149 RPSPPALLTIESVPASVAEGGSVLLRVHNL---PEHLQSLFWYKGLTMFNKV--------EIARH 202

  Fly   538 DPSKLLLESIGRGFFYNYSCEGFNAAGWGPRSEDKELLVHYEPGPAALSHFPLVAVKKKSVTFSC 602
            ..:|                   |:...||....:|::  |..|...|          ::||:. 
Mouse   203 RTAK-------------------NSIEMGPAHSGREIV--YSNGSLLL----------QNVTWK- 235

  Fly   603 SVDDPGF---PESNRFRWLRGGRGPLQDIVTKDWTVEPVGLDSRTNYSCYAYN------------ 652
               |.||   ...||:..:......||             :|:..:..|.|:|            
Mouse   236 ---DIGFYTLRTLNRYSRIELAHIYLQ-------------VDTSLSSCCDAFNSVQLRIDPVPPH 284

  Fly   653 --EGGKGVMATVNLEVHAPPFFIKNLPPYTGILHSSPNATLTCRIECVPRCDISWQ-KDGVPIER 714
              ||     .:|.|:||..|..::....|.|: :|:.:..: .....|....||.: ..|..|..
Mouse   285 AVEG-----ESVLLQVHNLPEDVQTFLWYKGV-YSTQDFKI-AEYSIVTESIISGRAHSGREIGY 342

  Fly   715 NDSRYFIKEKYMDASPATGDFESMLSVLHFNMPNWPDSKFNIEADNANYSCVSTGNIVGGSIRSR 779
            .:....::    |.:.....|.:::::         ||...:|..:..   |:...:|       
Mouse   343 TNGSLLLQ----DVTEKDSGFYTLVTI---------DSNAKVETAHVQ---VNVNKLV------- 384

  Fly   780 TYFGIEYAPENTTVSENIVYVQEDTIPGRVICKSRANPEPSYKWIFKNE--------TIANGNAL 836
                   ......|:::.|.||...:   ..|.| .|...|.:|:|.|:        |::.....
Mouse   385 -------TQPAMRVTDSTVRVQSSVV---FTCFS-DNTGVSIRWLFNNQRLQLTERMTLSPSKCQ 438

  Fly   837 IINTAMNRNDDGTYTCLAYNKHGSSIAKTVIKV 869
            :....:.:.|.|.|.|.|:|...|   ||.:.|
Mouse   439 LRIHTVRKEDAGEYQCEAFNPVSS---KTSLPV 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 Ig 44..152 CDD:299845
Ig 176..248 CDD:299845
Ig 277..354 CDD:299845
IG_like 383..463 CDD:214653 24/93 (26%)
Ig 394..463 CDD:143165 23/82 (28%)
Ig_3 585..652 CDD:290638 13/69 (19%)
Ig 685..>719 CDD:299845 6/34 (18%)
IG_like 788..869 CDD:214653 21/88 (24%)
Ig <811..869 CDD:299845 17/65 (26%)
Psg19NP_036094.2 Ig_CEACAM_D1 36..140 CDD:143251 30/115 (26%)
IG_like 46..134 CDD:214653 26/99 (26%)
Ig_CEACAM_D1 156..260 CDD:143251 28/162 (17%)
Ig_CEACAM_D1 276..380 CDD:143251 21/126 (17%)
IG_like 395..472 CDD:214653 21/81 (26%)
IGc2 400..461 CDD:197706 14/64 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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