DRSC/TRiP Functional Genomics Resources

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Protein Alignment nrm and Psg18

DIOPT Version :9

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_036093.2 Gene:Psg18 / 26438 MGIID:1347251 Length:476 Species:Mus musculus


Alignment Length:464 Identity:92/464 - (19%)
Similarity:163/464 - (35%) Gaps:125/464 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 ATCTVRNTRPQ--------------PE----VSWFRGTKRLTTYSPTHDL------VDGLYTSTL 225
            |..|:.:..||              ||    ..|:||...|......|.|      |.||..|..
Mouse    34 ARVTIESLPPQVYEGENVLLRVDNMPENLLVFGWYRGMTNLWQAIAQHWLYYYSVMVKGLNHSGR 98

  Fly   226 ELDW--------TLSREDLA----QDIECRVKSAAIQNVTV---TKFSVDLQVRPTSI---DING 272
            |:.:        .:::||..    |.|..|  ...:.|.::   ...|:.:.||||::   .|..
Mouse    99 EILYINGSLWIQNVTQEDTGYYTFQTISKR--GEIVSNTSLYLHVYSSLFICVRPTTLISPTIEL 161

  Fly   273 VKHHTVQGSKVVLTCDIHG-ARPAVNLTWYNTTTIISSGENEITEVRSKSLEKSDGTFHTQSELI 336
            |......|..::|.  :|. .:...:|.||.  .:|:..:.||...|:.......|..|:..|.:
Mouse   162 VPASVAAGGSILLL--VHNIPKYLQSLFWYK--GLIAFNKVEIARYRTAKNSGEPGPAHSGRETV 222

  Fly   337 FN---------------------ATRFENDRVFRCEAENIVLQINREKPISSALTLEVLYPPVVK 380
            ::                     .||::     :.|..:|.||::    .|.:|..:.|....:.
Mouse   223 YSNGSLLLQNVTWKDTGFYTLRTLTRYQ-----KMEFAHIYLQVD----TSHSLCCDTLDSAQLS 278

  Fly   381 VSPSAITANTSEIVLLNCEYFANPASLTQVEWYRNDILVNVNDTTHYK------------GGNSE 433
            :.|....|.....|||.....  |..:....||:     .|..|..:|            .|.:.
Mouse   279 IDPVPRHAAEGGSVLLQVHNL--PEDVQTFSWYK-----GVLSTQDFKIAEYSIATKSIIRGRAH 336

  Fly   434 --------NVALVIKSTEKEDIGNYS-CQLSNNIGKGTSDQKINLDVQYAPTVEILMIPEGPVKE 489
                    |.:|:::...::|.|.|: ..:.:|:...|:..::|  :....|...:.:.:..|:.
Mouse   337 SRREIGYTNGSLLLQDVTEKDSGLYTLITIDSNVRVVTAHVQVN--IHQLVTQPAMRVTDSTVRV 399

  Fly   490 SDESNVTLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHIDPSK--LLLESIGRGFF 552
              :|:|...|  ...|..|  .:||..|:..|:        ..:...:.|||  |.:.::.:...
Mouse   400 --QSSVVFTC--FSDNTGV--SIRWLFNNQRLQ--------LTERMTLSPSKCQLRIHTVRKEDA 450

  Fly   553 YNYSCEGFN 561
            ..|.||.||
Mouse   451 GEYQCEAFN 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 Ig 44..152 CDD:299845
Ig 176..248 CDD:299845 22/98 (22%)
Ig 277..354 CDD:299845 16/98 (16%)
IG_like 383..463 CDD:214653 18/100 (18%)
Ig 394..463 CDD:143165 16/89 (18%)
Ig_3 585..652 CDD:290638
Ig 685..>719 CDD:299845
IG_like 788..869 CDD:214653
Ig <811..869 CDD:299845
Psg18NP_036093.2 Ig_CEACAM_D1 36..141 CDD:143251 22/106 (21%)
IG_like <104..138 CDD:214653 6/35 (17%)
Ig_CEACAM_D1 157..261 CDD:143251 20/112 (18%)
Ig_CEACAM_D1 277..379 CDD:143251 19/108 (18%)
IG_like 396..473 CDD:214653 19/78 (24%)
IGc2 401..462 CDD:197706 18/71 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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