DRSC/TRiP Functional Genomics Resources

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Protein Alignment nrm and igcm-1

DIOPT Version :10

Sequence 1:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster
Sequence 2:NP_508166.1 Gene:igcm-1 / 180433 WormBaseID:WBGene00018215 Length:1073 Species:Caenorhabditis elegans


Alignment Length:1145 Identity:223/1145 - (19%)
Similarity:385/1145 - (33%) Gaps:323/1145 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 MQE-RQSLKATCTVRN---TRPQPEVSWFR---GTKRLTT------------YSPTHDLVDGLYT 222
            :|| .:.:...|.|:.   .|.:.|::|.|   |..|:.|            :...:|...|.|:
 Worm    38 LQEGNEGIVIPCVVKPEYFDRQKYEINWARYNNGQLRMITKNDKLLAKKHSRFILENDSATGNYS 102

  Fly   223 STLELDWTLSREDLAQDIECRVKSAAIQNVTVTKFSVDLQVRPTSIDINGV--KHHTVQGSKVVL 285
            ..:.   .:.:..:.....|.|......:|..:..:..:.:.|....|...  ....::|..:..
 Worm   103 LRIT---EVEKNSVEGTYHCNVIGTDDSDVQYSALATVVVLVPPGDPIISTTPSESVIEGDFMTA 164

  Fly   286 TCDIHGARPAVNLTWYNTTTIISSGENEITEVRSKSLEKSDGTFHTQSELIFNATRFENDRVFRC 350
            .|...|..|....||......|:|.....|:.|       ||.  |:|.|.|..|..::.:..:|
 Worm   165 KCVSVGGSPQPTFTWTLPNDTIASSAIFTTQFR-------DGA--TESLLHFRVTSSDDGKSVQC 220

  Fly   351 EAENIVLQINREKPISSALTLEVLYPPVVKVSPSA----ITANTSEIVLLNCEYFANPASLTQVE 411
            :..|..:.....|.:.|: .|.|||.|||.|:|:.    ::....|:|.|.|...:||.: ...|
 Worm   221 DVTNRAMLGGETKQVKSS-QLNVLYKPVVFVTPTENLTHLSVEEGELVNLTCNSASNPPA-HSYE 283

  Fly   412 WYRNDILVNVNDTTHYKGGNSENVALVIKSTEKEDIGNYSCQLSNNIGKGTSDQKINLDVQYAPT 476
            |            .|...|......:.....:....|::.|:.:|.:|:||:  .:.:.||:.|.
 Worm   284 W------------KHIASGERYQGKIWPIRVDSSMSGDFECRSTNELGEGTA--VLKMVVQHIPR 334

  Fly   477 VEILMIPEGPVKESDESNVTLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHIDPSK 541
            :.   :||. :..::..::.:.|.| .|.|.|: .::|...:...:               :.|:
 Worm   335 IN---VPES-ISPNEMEDIDILCEV-SAVPEVI-DIKWVGPNGFKQ---------------NGSR 378

  Fly   542 LLLESIGRGFFYNYSCEGFN------------AAGWGPRSEDKELLVHYEPGPAALSHFPLVAVK 594
            |.:.||.:....||:|...|            ..|.|....|    |..:||.|     .:|:.:
 Worm   379 LTITSISKAQSGNYTCMATNFLTVYGHSGSQQRMGTGTTIVD----VKRKPGQA-----QIVSAR 434

  Fly   595 K-----KSVTFSCSVDDPGFPESNRFRWL---RGGRGPLQDIVTKDWTVEPVGLDSRTNYSCYAY 651
            :     :::...|..:|.|.|.:: :.|.   .||...|:....|.:.|....|.....|||.||
 Worm   435 QNVDVGETIKLMCQAEDAGNPSAS-YTWASPSSGGIFGLEGHTEKSFEVRNAQLSDNGVYSCKAY 498

  Fly   652 NEGGKGVMATVNLEVHAPPFFIKNLPPYTGILHSSPNAT------------LTCRIECVPRCDIS 704
            |:.|:|.:.||.:.|......            |||.||            |.|..:..|...|.
 Worm   499 NDLGEGKIGTVMITVIEKARI------------SSPLATERIFTSGEQGKILECEAQGYPSPVIK 551

  Fly   705 WQKDGVPIERNDSRYFIKEKYMDASPATG-------DF--ESMLSVLHFNMP-NWPDSKFNIEAD 759
            |.|||.|::::          :.||.||.       ||  :::.|.|....| .|        :|
 Worm   552 WLKDGRPVKQS----------IYASSATSESKCLPEDFCTQTVASTLTLAGPLKW--------SD 598

  Fly   760 NANYSCVSTGNIVGGSIR------SRTYFGIEYAPE--NTTVSENIVYVQEDTIPGRVICKSRAN 816
            ..|::||:.    .||.:      |.|...:.:.|.  |....|..:...:......:.||..|.
 Worm   599 KGNFTCVAD----NGSDKTDKDSSSWTIVRVLHKPVFLNRKFPEKSLAAADIGSQAIIRCKVSAR 659

  Fly   817 PEPSYKWIFKNETIANGNALIINT-----------------AMNRNDDGTYTCLAYNKHGSSIAK 864
            |||.:.|:|::..|:.......:|                 ::..:|.|.|.|.|.|.:|.....
 Worm   660 PEPEFHWMFRDSEISENERHSFHTVGITGKPDEYEQLLQIESVQESDYGEYVCRATNGNGGDHVV 724

  Fly   865 TVIKVQFKPRCEIERQEID------------------DQDTLICTAYGNPIEADFSW-------- 903
            ..::....|...::.|::.                  ||..::.|...:|...:...        
 Worm   725 IELRKTSPPALPLDLQKLSATSNSVLLGWVPQFDGGADQTYVLETRKIDPFTGEIDGNAPVSKLN 789

  Fly   904 --SIKTENETDENLGS-------------------------GKKE----------------NSVE 925
              :::.:.|.|..|.|                         |:.|                |.:.
 Worm   790 INAVQQDQEIDGTLVSKNIFNFTGLTPLSTYNLRIQAVSEKGESEFTPVLIASTEDVVEDANMMS 854

  Fly   926 KSFYILQTDY----------------------AISRTYRC-VANNTVG--------YGPFCEI-- 957
            .|..:|.:..                      .|.||..| .::|.:|        ...||..  
 Worm   855 PSRLVLDSSEQKINVEPKLPSDACTLLYVFLDGIWRTSTCHTSSNPIGNIIPGREYRARFCTTAN 919

  Fly   958 -----EVAEQLA--WWQLWEKNTLI-ILVAAILGLLLTVIVICCIIICICRRRRRQDKYLTEVPI 1014
                 .|::.::  ...:|:.|... .|....:||.:      |:...:|.:.|...|.....||
 Worm   920 GLKCSPVSKTISSGSGSVWKTNVFFPFLFFIFIGLAI------CVFFLVCCKTRSNPKTSKLSPI 978

  Fly  1015 NSIQSALSDQLDMSRAGRNLSTQDKCTAILPNPSSSRFIGSAPKSPPRWPIRPGVMLHVSSNTKE 1079
             .:.|...|:|  .|.......:....||..|.::......|..:.|     ||:.:....:|..
 Worm   979 -ILTSLPGDEL--KRPADYEEPKHATFAITENETNHLSQHDAKSTKP-----PGLNMEYDVSTDC 1035

  Fly  1080 NLTVNRMTVKPNVSGNRGDMSQLSAQLSAALNGS-RDNSD 1118
            .|..|...:|             :..||...||. .:|||
 Worm  1036 YLQENTEVLK-------------NTSLSGFTNGDVLENSD 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrmNP_001246890.1 V-set 44..152 CDD:462230
Ig strand B 183..187 CDD:409353 0/3 (0%)
Ig <185..248 CDD:472250 14/80 (18%)
Ig strand C 197..201 CDD:409353 1/3 (33%)
Ig strand E 225..229 CDD:409353 0/3 (0%)
Ig strand F 239..244 CDD:409353 1/4 (25%)
Ig strand G 253..256 CDD:409353 0/2 (0%)
Ig 277..354 CDD:472250 18/76 (24%)
Ig strand B 283..287 CDD:409353 0/3 (0%)
Ig strand C 297..301 CDD:409353 1/3 (33%)
Ig strand E 333..337 CDD:409353 2/3 (67%)
Ig strand F 347..352 CDD:409353 1/4 (25%)
Ig_3 376..456 CDD:464046 17/83 (20%)
Ig 676..779 CDD:472250 30/130 (23%)
Ig strand B 689..693 CDD:409353 3/15 (20%)
Ig strand C 702..706 CDD:409353 1/3 (33%)
Ig strand E 734..741 CDD:409353 2/8 (25%)
Ig strand F 762..767 CDD:409353 2/4 (50%)
Ig <811..869 CDD:472250 17/74 (23%)
Ig strand C 820..824 CDD:143205 0/3 (0%)
Ig strand F 849..854 CDD:143205 2/4 (50%)
Ig strand G 862..865 CDD:143205 0/2 (0%)
PTZ00112 1747..>1940 CDD:240274
igcm-1NP_508166.1 Ig 140..235 CDD:472250 22/103 (21%)
Ig strand B 162..166 CDD:409418 0/3 (0%)
Ig strand C 176..181 CDD:409418 2/4 (50%)
Ig strand E 203..207 CDD:409418 2/3 (67%)
Ig strand F 217..222 CDD:409418 1/4 (25%)
Ig strand G 231..234 CDD:409418 0/2 (0%)
Ig_3 245..316 CDD:464046 17/83 (20%)
Ig_3 333..398 CDD:464046 16/85 (19%)
IG_like 437..513 CDD:214653 21/76 (28%)
Ig strand B 443..447 CDD:409353 0/3 (0%)
Ig strand C 458..461 CDD:409353 0/3 (0%)
Ig strand E 478..482 CDD:409353 1/3 (33%)
Ig strand F 492..497 CDD:409353 3/4 (75%)
Ig 538..617 CDD:409353 25/100 (25%)
Ig strand C 549..553 CDD:409353 1/3 (33%)
Ig strand E 586..590 CDD:409353 2/3 (67%)
Ig strand F 601..606 CDD:409353 2/4 (50%)
Ig 642..727 CDD:472250 17/84 (20%)
Ig strand B 650..654 CDD:409353 0/3 (0%)
Ig strand C 663..667 CDD:409353 0/3 (0%)
Ig strand E 688..699 CDD:409353 0/10 (0%)
Ig strand F 709..714 CDD:409353 2/4 (50%)
FN3 733..843 CDD:238020 12/109 (11%)
Blue background indicates that the domain is not in the aligned region.

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