DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slif and sbm

DIOPT Version :9

Sequence 1:NP_649428.1 Gene:slif / 40510 FlyBaseID:FBgn0037203 Length:604 Species:Drosophila melanogaster
Sequence 2:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster


Alignment Length:538 Identity:126/538 - (23%)
Similarity:219/538 - (40%) Gaps:92/538 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RKTEDVNEGESQ-----LARVLNLFDLTALGVGSTLGLGVYVLAGQVAFNIAGPAVTISFLI--- 67
            ||..:.| |.:|     |.|.|.||...||.||:.:|.|::|....:.  :...:|.:||:|   
  Fly    64 RKPLERN-GSTQNHVVHLERRLGLFSGVALIVGTMIGSGIFVSPSGLL--VRTGSVGVSFIIWLA 125

  Fly    68 AAIASAFAGICYAEFAARVPKAGSAYVYSYVTIGEFVAFTIGWNLILEYVIGTASVARGLSGYFD 132
            ..:.|....:.|||.......:|:.:.|.....|...||...|  :...|:..:.:|        
  Fly   126 CGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSW--VSTLVLKPSQMA-------- 180

  Fly   133 SLINNNMSKALNESMHIDVDFLGDYPDFLSFGMVLLLAAIL-----AFGAKESSFLNNIFTTVNL 192
             :|..:.::...|:...:.|     |......||.|:|.::     .:.......:.|:||...|
  Fly   181 -IICLSFAQYAVEAFVTECD-----PPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAKL 239

  Fly   193 VTIAIVLVAGAMNANVDNWRIPK---KDVPEGFGTGGFMPFGIAGVMAGA-AKCFY----GFVGF 249
            |.:.:|:..||       |::.:   :.:...|  .|.||      ..|| |..||    .:.|:
  Fly   240 VAVVVVICGGA-------WKLMQGNTQHLSNAF--NGPMP------NVGAIATAFYTGLWAYDGW 289

  Fly   250 DCIATTGEEAINPKRNIPLSIVVSLIIIFLSYFGVS-TVLTMMLPYYKQDKDAPFPHAFDSVEWY 313
            :.:....||..||.:|:|.||::.:.::.|.|..:: :.|..|.|....:.:| ....|.:....
  Fly   290 NNLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEA-VAVTFGNRILG 353

  Fly   314 TIKWIVTIGAVFALCTSLLGAMFPLPRILYAMGKDGILFKRLSTVNSYTKTPLLATIVSGIFASI 378
            .:.|::.:....:...|..|.:|...|:.:|..::|.|...||.|:....||....|...:.||.
  Fly   354 ALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASA 418

  Fly   379 MAMLFNLDQLVDMMSIGTLLAYTIVAICVLVLRYQDEEMTKLVSVKAPNVFRQFFNGNSFREPNS 443
            |.:...:|.|:|..|....:.|....:.::|:||     ||      ||..|.:           
  Fly   419 MVLHGTIDSLIDFFSFTAWIFYGGAMLALIVMRY-----TK------PNYPRPY----------- 461

  Fly   444 MTSSITKVGIV--VFAIFCLVWCSLQKVFDLDSTGGIVALSLVGAVLILIC--VVIGMQP--VST 502
                  ||.|:  |..:...|:.....:|:......:.||..:.|.||...  |.:||.|  ::.
  Fly   462 ------KVPIIIPVVVLVISVYLVAAPIFETPRVEYLYALLFIFAGLIFYVPFVKLGMTPRFMNK 520

  Fly   503 IELTFKVPLVPFVPCLSV 520
            :.|.|:: |:..||..|:
  Fly   521 VTLFFQL-LLEVVPTSSM 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slifNP_649428.1 2A0303 8..557 CDD:273330 126/538 (23%)
AA_permease_C 507..557 CDD:290617 5/14 (36%)
sbmNP_727785.1 2A0308 53..532 CDD:273332 123/531 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466569
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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