DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssl1 and GTF2H2

DIOPT Version :9

Sequence 1:NP_001262227.1 Gene:Ssl1 / 40509 FlyBaseID:FBgn0037202 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_683275.2 Gene:GTF2H2 / 839332 AraportID:AT1G05055 Length:421 Species:Arabidopsis thaliana


Alignment Length:421 Identity:163/421 - (38%)
Similarity:254/421 - (60%) Gaps:34/421 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ---AQK 52
            ::||:|::.:.      .||..|  :::||.:::||.|:|   |.:.....|..:|.|.   |..
plant     8 SNDEREEEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAA 72

  Fly    53 SKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKAKRA 117
            ..:.:.|::|::::|:|.|.:.:..|.:|:|:....|.:|.||.|||||||:||:||:::|...|
plant    73 GTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVA 137

  Fly   118 EKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDP 182
            ..:|:|.|:...|:|||  :..:....:.||||.|:|..:.|..|||:..||::|:..:|.||||
plant   138 HTLTDLGGSPETHIKAL--MGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDP 200

  Fly   183 VDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AK 246
            .||..||.:.||..:|||||.||||:.:.::|.|:|.|.:...:|:.|.:|.|:....|||| |:
plant   201 GDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

  Fly   247 TQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCELPVECQSC 311
            ....:||:||||  :...||.   :::|.||.|      .....|:.||:|.::.|:||.||..|
plant   266 FAIANLIKMGFP--QRAAEGS---MAICSCHKE------VKIGAGYMCPRCKARVCDLPTECTIC 319

  Fly   312 GLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSDVRECYGCAKAL-GQGVDKVADKVV 375
            ||||||:||||||||||||:..|:|:|  |:.:.:.:.....:.|:||.::| |.|...|.   .
plant   320 GLTLVSSPHLARSYHHLFPIAPFDEVP--ALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVP---C 379

  Fly   376 FRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
            ..|..||.:||:||||:||::||.|.||.:|
plant   380 VTCRKCKHYFCLDCDIYIHESLHNCPGCESI 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ssl1NP_001262227.1 SSL1 10..407 CDD:227480 160/413 (39%)
Ssl1 67..258 CDD:190848 80/191 (42%)
C1_4 291..403 CDD:297864 53/112 (47%)
GTF2H2NP_683275.2 SSL1 26..411 CDD:227480 160/403 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 161 1.000 Domainoid score I1267
eggNOG 1 0.900 - - E1_COG5151
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1159
Inparanoid 1 1.050 304 1.000 Inparanoid score I774
OMA 1 1.010 - - QHG54264
OrthoDB 1 1.010 - - D768809at2759
OrthoFinder 1 1.000 - - FOG0004477
OrthoInspector 1 1.000 - - oto3067
orthoMCL 1 0.900 - - OOG6_102284
Panther 1 1.100 - - LDO PTHR12695
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3170
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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