DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssl1 and Gtf2h2

DIOPT Version :9

Sequence 1:NP_001262227.1 Gene:Ssl1 / 40509 FlyBaseID:FBgn0037202 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001347635.1 Gene:Gtf2h2 / 23894 MGIID:1345669 Length:398 Species:Mus musculus


Alignment Length:405 Identity:205/405 - (50%)
Similarity:272/405 - (67%) Gaps:17/405 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKSKQNRLGMMRHMFVVLD 69
            ::|.::..|||.|||:|||.:|:||.|.|...|.:|:.||||:|..:...|.|||||||::||:|
Mouse     2 DEEPERTKRWEGGYERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVD 66

  Fly    70 CSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKAKRAEKVTELTGTSRVHLKAL 134
            .|.:|...||||.||.||:||||.|:||:||||||||:|:|..|:|||||:|||:|..|.|:.:|
Mouse    67 GSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSL 131

  Fly   135 ESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRC 199
            :...:::...||||.|.|.:|:::||.:|.|.|||::||..|||||||.:|...|..||...||.
Mouse   132 KKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKTAKIRV 196

  Fly   200 SVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHNSLIRMGFP-HTKNE 263
            |||.||||:.|...|.::|.||:..:||:.|:::.|...|.||||:.:...|||||||| ||...
Mouse   197 SVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSECSLIRMGFPQHTIAS 261

  Fly   264 VEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHL 328
            :..:||..|..|.|::|......||..|:.||||.:|||||||||:.||||||||||||||||||
Mouse   262 LSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHL 326

  Fly   329 FPVPNFEELPFEAMPASSSDLTSDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFI 393
            ||:..|:|:..|.....        |.||||     ||  ::.|:.|:.|..|:..||||||:|:
Mouse   327 FPLDAFQEISLEEYKGE--------RFCYGC-----QG--ELKDQHVYVCTVCQNVFCVDCDVFV 376

  Fly   394 HDTLHACVGC-NTIP 407
            ||:||.|.|| :.||
Mouse   377 HDSLHCCPGCIHKIP 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ssl1NP_001262227.1 SSL1 10..407 CDD:227480 202/398 (51%)
Ssl1 67..258 CDD:190848 98/190 (52%)
C1_4 291..403 CDD:297864 60/111 (54%)
Gtf2h2NP_001347635.1 Ssl1 64..255 CDD:367789 98/190 (52%)
C1_4 289..389 CDD:352591 62/114 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837103
Domainoid 1 1.000 203 1.000 Domainoid score I2965
eggNOG 1 0.900 - - E1_COG5151
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1159
Inparanoid 1 1.050 411 1.000 Inparanoid score I1844
Isobase 1 0.950 - 0 Normalized mean entropy S943
OMA 1 1.010 - - QHG54264
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004477
OrthoInspector 1 1.000 - - oto95069
orthoMCL 1 0.900 - - OOG6_102284
Panther 1 1.100 - - LDO PTHR12695
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1505
SonicParanoid 1 1.000 - - X3170
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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