DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssl1 and gtf-2H2C

DIOPT Version :10

Sequence 1:NP_649427.1 Gene:Ssl1 / 40509 FlyBaseID:FBgn0037202 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_499239.1 Gene:gtf-2H2C / 176421 WormBaseID:WBGene00011814 Length:376 Species:Caenorhabditis elegans


Alignment Length:414 Identity:153/414 - (36%)
Similarity:238/414 - (57%) Gaps:48/414 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADDEQEDQKEYRWETGYEKTW---EAIKDDEDGMLDGAIAEIIQKAKRQ-RQAQKSKQNRLGMM 61
            |.|||   ||.|.||.||.:..   :.:.:||.|.::.:||:.:..:||: |..::.::.|||:|
 Worm     1 MDDDE---QKGYTWEAGYAEGLNINDVLVEDEGGSIEKSIAKYVADSKRKARLTKRPERIRLGIM 62

  Fly    62 RHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKAKRAEKVTELTGT 126
            ||:.:|:|||..|:...:.|:|....:|.|:.|::.||:||||:|:|||..|.::|:::|.:||.
 Worm    63 RHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADRLTMMTGN 127

  Fly   127 SRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDE 191
            .||..::|.:|.......:.||||.|.||..:||.:|.|.|||:|:::.:|:|.||.:|..||:.
 Worm   128 IRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVISALSTIDPGNIYSTIET 192

  Fly   192 LKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHNSLIRMG 256
            :|:..||||.|.||||:.|.:.:.:.|.|.:...||..|.:........||.:||:...:.|.:|
 Worm   193 MKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSSAKSSECNAIHVG 257

  Fly   257 FPH-----TKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCELPVECQSCGLTLV 316
            |||     |:          |.|:||    .:...:::.|..|.||.:::|.:|.||..|.||||
 Worm   258 FPHHELITTR----------SFCVCH----PDTKPISSRGFICTQCGARHCSIPAECPVCKLTLV 308

  Fly   317 SAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSDVRECYGCAKAL-GQGVDKVADKVVFRCGF 380
            :||.|||::.||.|:..||::          ::|...  ||.|...| |:|         ||||.
 Worm   309 AAPQLARAFRHLQPLSAFEQI----------EVTRGF--CYACETRLSGEG---------FRCGS 352

  Fly   381 CKQFFCVDCDIFIHDTLHACVGCN 404
            |:..||:|||..:|::||.|.|||
 Worm   353 CQLVFCLDCDTLLHESLHVCPGCN 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ssl1NP_649427.1 SSL1 10..407 CDD:227480 148/405 (37%)
gtf-2H2CNP_499239.1 SSL1 3..375 CDD:227480 149/409 (36%)
Ssl1 68..245 CDD:461149 69/176 (39%)

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