DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11109 and nsun-4

DIOPT Version :10

Sequence 1:NP_730761.1 Gene:CG11109 / 40507 FlyBaseID:FBgn0037200 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_490958.1 Gene:nsun-4 / 171790 WormBaseID:WBGene00021476 Length:465 Species:Caenorhabditis elegans


Alignment Length:374 Identity:88/374 - (23%)
Similarity:145/374 - (38%) Gaps:123/374 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 SVDDFRKKLEEKL-----AIRYGVKSPRIYCLPNLPEMLCIDPLDSQLTKAVADSELKEVVVDTN 109
            :::..||.:|||.     .:::.:.:|                   ..:....|||..|.:..:.
 Worm   107 AIETKRKSVEEKANRETQKVKHEISNP-------------------STSTNTEDSEPDEAIFRSA 152

  Fly   110 CGAALLR-GAHIYAPGVLAM---ESNTEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVL 170
            .|....| .|...:.|.|.|   :||..:    ||  ::.|                |.|.|..:
 Worm   153 AGLGEFRASAGELSSGSLQMGLGQSNQNK----NV--EITG----------------FEGEGVRI 195

  Fly   171 MQRYQLFNNAEK--------------PASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVR 221
            .:|...|...:.              ||     .|:..| |||:...|   ||     .|::.|.
 Worm   196 PKRDHFFYYPQALHVRSFDRAVLLDFPA-----PMKDEV-GVPSYWLL---DG-----GSLLPVL 246

  Fly   222 VLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRV---RSMLPKLGHYK-SITAHV 282
            .|..|..:.:||||||||.|:           .:.||.|..|::   ...|.:||..| ::..:|
 Worm   247 ALGLQKDDSLLDMCAAPGGKS-----------LLAALSNLPSKIVCNDFKLARLGQLKRALMTYV 300

  Fly   283 FNSTEAV---------AADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSCSIKQVKV 338
            ...:|.:         |:|..:  ..||       |::|::|:|.|||    ..:||.|.....:
 Worm   301 PEDSETIDKFVLKRKDASDVKT--WDEF-------EAYDKVLVDVPCS----TDRLSVSTDDGNL 352

  Fly   339 LSS--------YPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLV 379
            .|:        .|.:|.::...|::.|:.||.:||||||::..:.|.:|
 Worm   353 FSTGSTQQRLDLPVLQTKILVNALRSVKVGGSVVYSTCTLSPSQNEAVV 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11109NP_730761.1 PUA_NSun6-like 102..195 CDD:409292 20/110 (18%)
RsmB <207..439 CDD:439914 54/194 (28%)
nsun-4NP_490958.1 RsmB <238..394 CDD:439914 52/184 (28%)

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