DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arf1 and ARFD1B

DIOPT Version :10

Sequence 1:NP_476955.1 Gene:Arf1 / 40506 FlyBaseID:FBgn0010348 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_171745.3 Gene:ARFD1B / 839242 AraportID:AT1G02430 Length:190 Species:Arabidopsis thaliana


Alignment Length:194 Identity:94/194 - (48%)
Similarity:136/194 - (70%) Gaps:17/194 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFT 64
            ||......|.|.|.::|.||::.|||||||::|::|||.|| :.||:||||.:||:|:||:.:..
plant     1 MGTALGKPFAGFFHQEESRIVLFGLDAAGKSSIMHKLKTGETLTTTMPTIGTDVESVKYKDSNLR 65

  Fly    65 VWDVGGQD--KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV-----LL 122
            .|::|||.  |..|:.:|.||...||:.||||.||:||.:|::.|..::  ||::.:|     :|
plant    66 FWEMGGQQCYKWFPMTKHDFQEIAGLVLVVDSTDRDRIEDAKDFLNAVI--DEIQGSVPDNVAVL 128

  Fly   123 IFANKQDLPNAMNAAEITDKLGLHSLR----NRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
            :|.||.::|.||:|:||::||.|.|||    .|||::|::||.|||||:||||||   ||||.|
plant   129 VFGNKHEVPGAMSASEISNKLDLTSLRQKNWQRNWHVQSSCAFSGDGLHEGLDWL---LKNAER 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arf1NP_476955.1 ARF 5..179 CDD:128474 88/185 (48%)
ARFD1BNP_171745.3 Arf_Arl 19..186 CDD:206644 84/171 (49%)

Return to query results.
Submit another query.