DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arf79F and arl4cb

DIOPT Version :9

Sequence 1:NP_001097667.1 Gene:Arf79F / 40506 FlyBaseID:FBgn0010348 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_998413.1 Gene:arl4cb / 406531 ZFINID:ZDB-GENE-040426-2382 Length:192 Species:Danio rerio


Alignment Length:181 Identity:86/181 - (47%)
Similarity:118/181 - (65%) Gaps:14/181 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNVFANL--FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN--- 60
            |||.|:|:  |:.|      .|:|:|||:|||||:||:||..|.|.|:||||||.|.::..|   
Zfish     1 MGNSFSNISAFQSL------HIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTA 59

  Fly    61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLI 123
              ||...||||||:|:||||:.|.:.|.|:|:||||.|.:|:.||:.||.::....|.:...||:
Zfish    60 KGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLV 124

  Fly   124 FANKQDLPNAMNAAEITDKLGLHSLRNRNWY-IQATCATSGDGLYEGLDWL 173
            .|||||||.:::.|:|..:|.|..|.....| ||..||..|:||:||:|.|
Zfish   125 IANKQDLPKSLSVADIEKQLALQELTPATTYHIQPACAIIGEGLHEGMDKL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arf79FNP_001097667.1 ARF 5..179 CDD:128474 83/177 (47%)
arl4cbNP_998413.1 Arl4_Arl7 11..192 CDD:206719 81/171 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.