DRSC/TRiP Functional Genomics Resources

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Protein Alignment SPoCk and PMR1

DIOPT Version :9

Sequence 1:NP_001262220.1 Gene:SPoCk / 40495 FlyBaseID:FBgn0052451 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_011348.1 Gene:PMR1 / 852709 SGDID:S000003135 Length:950 Species:Saccharomyces cerevisiae


Alignment Length:993 Identity:459/993 - (46%)
Similarity:619/993 - (62%) Gaps:95/993 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 DEDNVDQQNGNIIQTGLTLTPEMLLSTS---ESSTHSASEVAGRLQVDVRTGLKWT-EAKYRAKI 142
            |||:      |..:..|..|.|.|...|   |..|.|..|...:|..|...||:.: ||..|..:
Yeast    12 DEDS------NREREILDATAEALSKPSPSLEYCTLSVDEALEKLDTDKNGGLRSSNEANNRRSL 70

  Fly   143 IGHNELLLVAEDPTWKKYIEQF-RNPLILLLLGSALVSVIMKQFDDAVSITIAILIVVTVAFIQE 206
            .|.||:.:..::..:||::..| .:.:||||:|||:||:.|...|||||||:||.|||||.|:||
Yeast    71 YGPNEITVEDDESLFKKFLSNFIEDRMILLLIGSAVVSLFMGNIDDAVSITLAIFIVVTVGFVQE 135

  Fly   207 YRSEKSLEELKKLVPPECHCLREGRLDTFLARELVPGDIVHLNVGDRVPADVRLFEAVDLSIDES 271
            ||||||||.|.||||.|||.:|.|:....||..|||||:||..:|||:|||:|:.||:|||||||
Yeast   136 YRSEKSLEALNKLVPAECHLMRCGQESHVLASTLVPGDLVHFRIGDRIPADIRIIEAIDLSIDES 200

  Fly   272 SFTGETEPARKITDVLLNNTNVKDHSN-------MKNIAFMGTLVRCGNGKGIVVSTGERSEFGE 329
            :.|||.||..| |...:..::..|..|       ...||:|||||:.|:||||||.||..:.||.
Yeast   201 NLTGENEPVHK-TSQTIEKSSFNDQPNSIVPISERSCIAYMGTLVKEGHGKGIVVGTGTNTSFGA 264

  Fly   330 VFKMMQAEEAPKTPLQKSMDILGAQLSFYSFLIIGVIMLLGWLQGKPLSEMFNISVSLAVAAIPE 394
            ||:||...|.||||||.:||.||..||..||::||:|.|:|.:||:...|||.||||||||||||
Yeast   265 VFEMMNNIEKPKTPLQLTMDKLGKDLSLVSFIVIGMICLVGIIQGRSWLEMFQISVSLAVAAIPE 329

  Fly   395 GLPIVVTVTLALGVMRMAKRNSIVKKLPTVETLGCVNVICSDKTGTLTKNEMTATIIITSDGYMA 459
            ||||:|||||||||:|||||.:||::||:|||||.|||||||||||||.|.||.:.:...|....
Yeast   330 GLPIIVTVTLALGVLRMAKRKAIVRRLPSVETLGSVNVICSDKTGTLTSNHMTVSKLWCLDSMSN 394

  Fly   460 DVTGAGYNDQGEIHIRHCNNVEMAKTNITNLLEIGAVCNNAYI--QNGTLLGQPTEGALVAVAMK 522
            .:.....:...:....:.|.......::...|.||.:||||..  ::...||.||:.||:.....
Yeast   395 KLNVLSLDKNKKTKNSNGNLKNYLTEDVRETLTIGNLCNNASFSQEHAIFLGNPTDVALLEQLAN 459

  Fly   523 NGMYATAENYVRIQEYPFSSEQKMMAVKCIHKYNNNKEEIFFAKGALETLLPQCTKY--QFGTQT 585
            ..|........::||.||:|::|:||.|.::..:|  :...:.|||.|.:|...|.|  ..|.:|
Yeast   460 FEMPDIRNTVQKVQELPFNSKRKLMATKILNPVDN--KCTVYVKGAFERILEYSTSYLKSKGKKT 522

  Fly   586 VPLTKQNEAEFLAEAYEIGRKGLRVLALAK-----------GRSMQDLIYCGLVGITDPPRPLVR 639
            ..||:..:|.....|..:..:||||...||           ...::||.:.||:|:.|||||.|:
Yeast   523 EKLTEAQKATINECANSMASEGLRVFGFAKLTLSDSSTPLTEDLIKDLTFTGLIGMNDPPRPNVK 587

  Fly   640 ESIEMLMQSGVRVKMVTGDAQETALAIDPSRRLQAVPTHAIPAWPTAGGVPLCSASACCSTNCLE 704
            .:||.|:|.||.:.|:|||::.||:                                        
Yeast   588 FAIEQLLQGGVHIIMITGDSENTAV---------------------------------------- 612

  Fly   705 NAMKEIYLTALAQQGLPLVTANLIGIDTIHHQTLSGQEMDQMNEHQLDKVANNVSVFYRVSPRHK 769
            |..|:|        |:|::...|        ..|||.::|:|::.||..|.::|::|.|.:|.||
Yeast   613 NIAKQI--------GIPVIDPKL--------SVLSGDKLDEMSDDQLANVIDHVNIFARATPEHK 661

  Fly   770 LEIVKSLQRSGNIVGMTGDGVNDGVALKKADIGIAMGKNGTDVCKEAADMILVNDDFHTIIAAIE 834
            |.||::|::.|::|.||||||||..|||.:|||::||:.||||.|||:||:|.:|||.||:.|||
Yeast   662 LNIVRALRKRGDVVAMTGDGVNDAPALKLSDIGVSMGRIGTDVAKEASDMVLTDDDFSTILTAIE 726

  Fly   835 EGKGIFYNIRNFVRFQLSTSIAALALIALATLMDIANPLNAMQILWINIIMDGPPAQSLGVEPVD 899
            ||||||.||:||:.||||||:|||:|:||:|...:.|||||||||||||:|||||||||||||||
Yeast   727 EGKGIFNNIQNFLTFQLSTSVAALSLVALSTAFKLPNPLNAMQILWINILMDGPPAQSLGVEPVD 791

  Fly   900 HDVLKQKPRNVKQPMITKSVVVNVLLSASIIVLGTLWVFQREMADGTLGK-TKRDTTMTFTCFVF 963
            |:|:|:.||.....::|..|:..:|.:|:.|::||:::|.:|||:.  || |.||||||||||||
Yeast   792 HEVMKKPPRKRTDKILTHDVMKRLLTTAACIIVGTVYIFVKEMAED--GKVTARDTTMTFTCFVF 854

  Fly   964 FDMFNALSCRSQTKSVFTIGLTTNRMFLLAVAFSIIGQMLVVYFPPLQMVFQTEALTPYDIFFLV 1028
            |||||||:||..|||:|.||..||:||..||..|::|||..:|.|..|.:|:||.|...||..|:
Yeast   855 FDMFNALACRHNTKSIFEIGFFTNKMFNYAVGLSLLGQMCAIYIPFFQSIFKTEKLGISDILLLL 919

  Fly  1029 SLTSSVLVVSEIKKWFER 1046
            .::|||.:|.|::|.:.|
Yeast   920 LISSSVFIVDELRKLWTR 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPoCkNP_001262220.1 ATPase-IIA2_Ca 110..1049 CDD:130585 450/962 (47%)
Cation_ATPase_N 112..179 CDD:279080 23/68 (34%)
E1-E2_ATPase 191..425 CDD:278548 145/240 (60%)
Cation_ATPase 496..579 CDD:289987 27/84 (32%)
COG4087 <760..823 CDD:226572 37/62 (60%)
Cation_ATPase_C 872..1044 CDD:279079 99/172 (58%)
PMR1NP_011348.1 ATPase-IIA2_Ca 35..940 CDD:130585 450/964 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343864
Domainoid 1 1.000 225 1.000 Domainoid score I431
eggNOG 1 0.900 - - E2759_KOG0202
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56672
Inparanoid 1 1.050 791 1.000 Inparanoid score I63
Isobase 1 0.950 - 0 Normalized mean entropy S507
OMA 1 1.010 - - QHG53587
OrthoFinder 1 1.000 - - FOG0000231
OrthoInspector 1 1.000 - - oto99614
orthoMCL 1 0.900 - - OOG6_100158
Panther 1 1.100 - - LDO PTHR42861
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R98
SonicParanoid 1 1.000 - - X1037
TreeFam 1 0.960 - -
1615.740

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