DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArfGAP3 and arfgap2

DIOPT Version :9

Sequence 1:NP_001097664.2 Gene:ArfGAP3 / 40487 FlyBaseID:FBgn0037182 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_005159305.1 Gene:arfgap2 / 641490 ZFINID:ZDB-GENE-051120-177 Length:551 Species:Danio rerio


Alignment Length:613 Identity:222/613 - (36%)
Similarity:313/613 - (51%) Gaps:130/613 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTFVRST 69
            |:.|:|.||.::|.|||:.|.||:|||||||.|:|:|::||:|:|||||.:||:|||||:|:|||
Zfish     2 ASEPNKTEIHTIFKRLRSIPTNKACFDCAAKNPSWASISYGVFLCIDCSGIHRSLGVHLSFIRST 66

  Fly    70 NLDTNWTWLQLRQMQLGGNANAAQFFRAHNCSTTDAQVKYNSRAAQLYRDKLCAQAQQAMKTHGT 134
            .||:||.|.|||.||:||||||..|||.|.|:|.|...||||||||:||:|:...|..|:..:||
Zfish    67 ELDSNWNWFQLRCMQVGGNANAMGFFRQHGCTTNDTNAKYNSRAAQMYREKIRQLANAALSKYGT 131

  Fly   135 KLHLEQTDKSEGNEA-AREEDFFAQ---------------CDNEVDFNV-----QNNNVSKQDPN 178
            .|.::.:..::.:.. .||.|||.:               .|.....||     |:|..:.:.||
Zfish   132 DLWIDSSSCAQPSPVEKRETDFFDEHTQPAISWDMASPSLTDQNGAENVNPQLAQSNPKNSETPN 196

  Fly   179 PPTVAPVISVETQQGGAPSVNLLNSVVPAAV------------------PSSIGARKVQPKKGGL 225
                       ||....||:..|::...|.:                  ||.||.:|....|.||
Zfish   197 -----------TQPEEGPSIEGLSTSPKATIEDSMRLTSEEPQSPKDVKPSIIGKKKPVAAKKGL 250

  Fly   226 GARKVGGLGATKVKT-NFADIEARANAANEMKTSAAAAPVVKPQTAEDELETVASMRLAYQELSM 289
            ||:|  ||||.||.: :|:::|.:|..|.:|:...||.  .|.|..|   ..||||||||:||.:
Zfish   251 GAKK--GLGAQKVSSKSFSEVEKQAQVAEKMREEQAAE--AKKQADE---SIVASMRLAYKELEI 308

  Fly   290 QKTREEAKLKTMDPAKAKQMERLGMGFNLRGSDMAHSALGDMETIQQ------SAAPKAKLSLLE 348
            .:..||.|::.::..|.:|.|||||||..| |.::||.:.:|:.|:|      .::.::||.:.|
Zfish   309 DRKMEEKKMQNLEGKKKEQAERLGMGFGNR-SAVSHSVMAEMQVIEQETPVGVKSSSRSKLDMFE 372

  Fly   349 SENF-----------FTDFSLYGNSSSGGGGGGSS-------EKRESSVGGTSKLDKFELDALGY 395
            ...|           ||....:|:.....||...|       |.::|.|..:|            
Zfish   373 EPGFASGPPKYKDNPFTSGDSFGSRWDNDGGSSFSSWALEKEEPKDSEVTISS------------ 425

  Fly   396 ETIEPIGGSHSNITSMFSRSNDYDKPKTSAPVKKNSGSSQTHTKGGTSTDPVIAQQKFGNSKGFG 460
              |:|||          .|.....||:.|.||.::|.                |:|||.|:|...
Zfish   426 --IQPIG----------ERLPSRRKPEVSVPVSESSE----------------ARQKFANAKAIS 462

  Fly   461 SDQYFASEQS-SADVSASLNRFQGSRAISSSDYFGDGSPGGTGGNRASSVNFSAPDLDVESVKES 524
            ||.:|..|.: ..:....|....||.:|||:|.|||||...:|.....||..|.||:      ..
Zfish   463 SDMFFGRESNPEYEAKTRLEGMSGSTSISSADLFGDGSVRPSGSTGFDSVLPSGPDI------AQ 521

  Fly   525 VRQGVHKVAGRLSNLANDVMTSWQDKYG 552
            .:|||..|||:::.|||.||.:.||:||
Zfish   522 FKQGVKTVAGKMAVLANGVMNTIQDRYG 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP3NP_001097664.2 ArfGap 17..121 CDD:214518 69/103 (67%)
arfgap2XP_005159305.1 PLN03114 1..498 CDD:178661 197/554 (36%)
ArfGap 13..117 CDD:279720 69/103 (67%)
TMF_DNA_bd 270..331 CDD:289127 25/65 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 170 1.000 Domainoid score I3740
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8735
Inparanoid 1 1.050 336 1.000 Inparanoid score I2376
OMA 1 1.010 - - QHG52037
OrthoDB 1 1.010 - - D1155557at2759
OrthoFinder 1 1.000 - - FOG0001852
OrthoInspector 1 1.000 - - otm24477
orthoMCL 1 0.900 - - OOG6_101784
Panther 1 1.100 - - O PTHR45686
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R495
SonicParanoid 1 1.000 - - X1214
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.870

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