DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArfGAP3 and Appl2

DIOPT Version :9

Sequence 1:NP_001097664.2 Gene:ArfGAP3 / 40487 FlyBaseID:FBgn0037182 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001102211.1 Gene:Appl2 / 362860 RGDID:1563028 Length:662 Species:Rattus norvegicus


Alignment Length:455 Identity:91/455 - (20%)
Similarity:153/455 - (33%) Gaps:129/455 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNL----GVHLTFVRST 69
            |:||:.||                       |...|...|.:....::|||    | :|.....|
  Rat   250 SQQELLSV-----------------------SESVYTPDIDVATPQINRNLIQKTG-YLNLRNKT 290

  Fly    70 NLDTNWTWLQLRQMQLGGN-------ANAAQFFR-AHNCS--TTDAQ----------------VK 108
            .|.|. ||.:|.....|||       |.|....: ..|||  ..|.:                :.
  Rat   291 GLVTT-TWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSVMAVDCEDRRYCFQISTPSGKPGII 354

  Fly   109 YNSRAAQLYRDKLCA-------------QAQQAMKTHGTKLHLEQTDKSEGNEAAREEDFFAQCD 160
            ..:.:.:.|.:.:||             ....|:|.:.|.|.......|.|.:  :|..:|:|  
  Rat   355 LQAESRKEYEEWICAINNISRQIYLTDNPEAVAIKLNQTALQAVTPITSFGKK--QESFYFSQ-- 415

  Fly   161 NEVDFNVQNNNVSKQDPNPPTVAPVISVETQQGGAPSVNL-LNSVVPAA--VPSSIGARKVQPKK 222
                 |::|::.......|...|.:  .||::..||...: .:.|:||.  :..:.|:|::.|  
  Rat   416 -----NIKNSDTGYVKIVPKAAASI--PETEELIAPGTPIQFDIVLPATEFLDQNRGSRRINP-- 471

  Fly   223 GGLGARK-----------------VGGLGATKVKTNFADIEARANAANEMKTSAAAAPVVKPQTA 270
              .|..:                 |..||:..|||: :..|....|..::..:.|...:.:  |.
  Rat   472 --FGETEDDSFPDAEDSLLQQMFIVRFLGSMAVKTD-STTEVIYEAMRQVLAARAIHNIFR--TT 531

  Fly   271 EDELETVASMRLAYQELSMQKTREEAKLKTMDPAKAKQMERLGMGF------------------- 316
            |..| .|.|..|...:...|.:|...:|.::....|.|..:..:||                   
  Rat   532 ESHL-MVTSQTLRLIDPQTQVSRACFELTSVTQFAAHQENKRLVGFVIRVPESTGEESLSTYIFE 595

  Fly   317 -NLRGSDMAHSALGDMETIQQSAAPKAKLSLLESENFFTD--FSLYGNSSSGGGGGGSSEKRESS 378
             |..|..:.::.....|.|:....|:|...|:.|.....|  :.|..:.:...||..|..:...|
  Rat   596 SNSEGEKICYAINLGKEIIEVQKDPEALARLMLSVPLTNDGKYVLLNDQADDTGGSPSDHRGAES 660

  Fly   379  378
              Rat   661  660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP3NP_001097664.2 ArfGap 17..121 CDD:214518 24/133 (18%)
Appl2NP_001102211.1 BAR_APPL2 20..234 CDD:153316
BAR-PH_APPL 252..376 CDD:270067 30/148 (20%)
PTB_APPL 480..613 CDD:269980 24/136 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 643..662 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.