DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArfGAP3 and Agap3

DIOPT Version :9

Sequence 1:NP_001097664.2 Gene:ArfGAP3 / 40487 FlyBaseID:FBgn0037182 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_006236000.1 Gene:Agap3 / 362300 RGDID:1310751 Length:1093 Species:Rattus norvegicus


Alignment Length:72 Identity:32/72 - (44%)
Similarity:42/72 - (58%) Gaps:1/72 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQ 84
            :|....|..|.||.|..|.|:|:..|..:||:||.:||:||.||:.|||.:|| :|....|..|.
  Rat   850 VRTARGNSFCVDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLD-DWPPELLAVMT 913

  Fly    85 LGGNANA 91
            ..|||.|
  Rat   914 AMGNALA 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP3NP_001097664.2 ArfGap 17..121 CDD:214518 32/72 (44%)
Agap3XP_006236000.1 small_GTPase 309..474 CDD:197466
Centaurin_gamma 311..468 CDD:133303
PH_AGAP 584..827 CDD:241281
PH 587..>648 CDD:278594
ArfGap 855..960 CDD:279720 31/67 (46%)
Ank_2 971..1061 CDD:289560
ANK 971..>1060 CDD:238125
ANK repeat 971..1001 CDD:293786
ANK repeat 1003..1034 CDD:293786
ANK repeat 1036..1061 CDD:293786
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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