DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArfGAP3 and Git

DIOPT Version :9

Sequence 1:NP_001097664.2 Gene:ArfGAP3 / 40487 FlyBaseID:FBgn0037182 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster


Alignment Length:667 Identity:134/667 - (20%)
Similarity:223/667 - (33%) Gaps:193/667 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASPAAGPSKQEIESVFSRLRAQPANKS------CFDCAAKAPTWSSVTYGIFICIDCSAVHRNL 59
            :|.|....|.....::.:|.: .|..||      |.||.|..|:|:|:..||.:|.||.:|||:|
  Fly    16 IAPPDLDHSDPATPTISTRSK-MPRGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSL 79

  Fly    60 GVHLTFVRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNC---STTDAQVKYNSR-AAQLYRDK 120
            |.|::.|:|.. ..||....|..:. ..||:.|.....|:.   ||.....|:..| .....:|.
  Fly    80 GRHISIVKSLR-QGNWEPSVLNFVN-SLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDA 142

  Fly   121 L------CAQAQQAMKTHGTKLHLEQTDKSEGNEAAREEDFFAQCDNEVDFNVQNNN-------- 171
            |      ..:|:....|...|..|:..|...|:....|::.    ..::..:|:.:|        
  Fly   143 LHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGSAGCLEQEL----SRQLHASVRTSNLETSLRFL 203

  Fly   172 VSKQDPN---PPTVAPVISVETQQGGAPSVNLL------------NSVVPAAVP-----SSIGAR 216
            |...|||   ...::..:.:..:.|.|..:.:|            |.:.|..:.     ::|..|
  Fly   204 VQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVNALDGNGMTPLELARANNHNTIAER 268

  Fly   217 ----------KVQPKKGGLGARKVGGLGATKVKTNFADIEARANAANEMKTSAAAAPVVKPQTAE 271
                      ::....||.......|........|.|||      :.::|.:.....:|..:..|
  Fly   269 LLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDANGADI------SEQLKIARGKLQLVPNKMFE 327

  Fly   272 D------------ELETVASMRL------------AYQELSMQKTREEAKLKTMDPAK------- 305
            :            |.|.:.|...            |...||..:.:...||...:.|:       
  Fly   328 ELVMDLYDEVDRRECEAIWSTSTLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTD 392

  Fly   306 --AKQMERLGMGFNLRGSDMAHSALGDMETIQQSAAPKAKLSLLESENFFTDFSLYGNSSSGGGG 368
              ...|.|..|. |||..|                ||.|....|:|..:..:..|.|:...||..
  Fly   393 VLVDAMRRQNMA-NLRPMD----------------APVAGHQSLQSLPYANNSMLLGSFEQGGHD 440

  Fly   369 GGSSEKRESSVGGTSKLDKFELDALG----YETIEPI------------GGSHSNITSMFSRSND 417
            ...|:            |:...|.:.    |..:.|:            ..||:.:.::..:.||
  Fly   441 PNLSD------------DEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEMETLRKQLND 493

  Fly   418 YDKPKTSAPVKKN------SGSSQTHTKGGTSTDPVIAQQKF---------------------GN 455
            |   |:.....||      |.::|..:|..::::..:..:..                     |.
  Fly   494 Y---KSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDLSLSSPDTEHEPLSLPEGGT 555

  Fly   456 SKGFGSDQYFASEQSSADVSASL-------NRFQGSRAI--SSSDY--FGDGSPGGTGGNRASSV 509
            :.|.......:|.||:....||:       |..:|:..|  ::|.|  .|||.|.|......|  
  Fly   556 ANGESGSSNDSSNQSTIKRPASMYERRLVPNVAKGNTDIRNTTSMYQMAGDGKPFGEEVKVRS-- 618

  Fly   510 NFSAPDLDVESVKESVR 526
                 ||....:||.:|
  Fly   619 -----DLVTRRLKELIR 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP3NP_001097664.2 ArfGap 17..121 CDD:214518 36/113 (32%)
GitNP_610599.3 ArfGap 48..164 CDD:279720 35/117 (30%)
Ank_2 187..279 CDD:289560 13/91 (14%)
ANK <187..270 CDD:238125 13/82 (16%)
ANK repeat 187..213 CDD:293786 6/25 (24%)
ANK repeat 215..247 CDD:293786 3/31 (10%)
ANK repeat 249..279 CDD:293786 4/29 (14%)
GIT_SHD 314..342 CDD:285690 2/27 (7%)
GIT 374..404 CDD:128828 5/29 (17%)
GIT1_C 609..727 CDD:289013 8/29 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464120
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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