DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArfGAP3 and arfgap1

DIOPT Version :9

Sequence 1:NP_001097664.2 Gene:ArfGAP3 / 40487 FlyBaseID:FBgn0037182 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001007304.1 Gene:arfgap1 / 100149572 ZFINID:ZDB-GENE-041114-130 Length:394 Species:Danio rerio


Alignment Length:473 Identity:125/473 - (26%)
Similarity:181/473 - (38%) Gaps:121/473 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASPAAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTF 65
            ||||       ....|...:|.:..|..||:|.|..|.|.||||||:||::||..||.|||||:|
Zfish     1 MASP-------RTRRVLKEVRTEDENNVCFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSF 58

  Fly    66 VRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAH-----NCSTTDAQVKYNSRAAQLYRDKLCAQA 125
            |||.::| .|..|:|.:|:.|||.....|....     |.|   .|.|||||||.|:|||:...|
Zfish    59 VRSVSMD-KWKDLELEKMKAGGNRKFRMFLELQDDYDPNWS---LQEKYNSRAAALFRDKVATLA 119

  Fly   126 ---QQAMKTHG--------TKLHLEQTDKSEG----NEAAREEDFFAQCDNEVDFNVQNNNVS-- 173
               :.:|:...        .|..|..|.:|..    |....:..|.....::|: :.||...|  
Zfish   120 DGKEWSMEDSSARNWTPPQAKSSLSSTHRSSAAAGQNHTHSDRAFEDWLSDDVN-SYQNAGASGA 183

  Fly   174 --------KQDPNPP-TVAPVISVETQQGGAPSVNLLNSVVPAAVPSSIGARKVQPKKGGLGARK 229
                    ...|||| .....|:           |.:.|:.......::||.|:           
Zfish   184 QENRYVGFGNTPNPPKKEEDFIN-----------NAMTSIYSGWSNFTVGASKI----------- 226

  Fly   230 VGGLGATKVKTNFADIEARANAANEMKTSAAAA------PVVKP-QTAEDELETVASMRLAYQEL 287
                 |:..|.|.:.:      ||:....||..      .|:|| |....|...:..|.:....|
Zfish   227 -----ASIAKDNTSKL------ANQATLKAAELGQTLNDNVIKPTQEKVKEGRLLDEMAVGISGL 280

  Fly   288 SMQKTREEAKLKTMDPAKAKQMERLGMGFNLR--GSDMAHSALGDMETIQQS-AAPKAKLSLLES 349
            :::          :..|.||..:.:...|:.:  |:|...||..:....|.: .||..|      
Zfish   281 AVK----------VQGAGAKGWKDMTSFFSGKPDGADEGSSAYEEGYQSQDAFGAPAPK------ 329

  Fly   350 ENFFTDFSLYGNSSSGGGGGGSSEKRESSVGGTSKLDKFELDALGYETIEPIGGSHSNITSMFSR 414
            .:|:..|.  .||:..|.....:|.:.|:..|....|.      .:||   .||:.:        
Zfish   330 RDFWETFG--SNSALSGNTEALAEHKPSTGDGWDAWDN------NWET---SGGAQN-------- 375

  Fly   415 SNDYDKPKTSAPVKKNSG 432
            .|...|||.......|||
Zfish   376 QNQNQKPKPQEESWDNSG 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP3NP_001097664.2 ArfGap 17..121 CDD:214518 51/108 (47%)
arfgap1NP_001007304.1 ArfGap 7..114 CDD:279720 51/110 (46%)
chaperonin_like <194..>277 CDD:295468 23/115 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1155557at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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