DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trxr-2 and LPD1

DIOPT Version :9

Sequence 1:NP_524216.1 Gene:Trxr-2 / 40475 FlyBaseID:FBgn0037170 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_116635.1 Gene:LPD1 / 850527 SGDID:S000001876 Length:499 Species:Saccharomyces cerevisiae


Alignment Length:506 Identity:133/506 - (26%)
Similarity:226/506 - (44%) Gaps:48/506 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LRSSLGWCRLAASRPR-----YDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKWG 74
            :||.|...|..:|..|     ..:|:|::|||.||...|.:||..|....|        |..:..
Yeast     4 IRSLLNNKRAFSSTVRTLTINKSHDVVIIGGGPAGYVAAIKAAQLGFNTAC--------VEKRGK 60

  Fly    75 IGGTCVNVGCIPKKLMHQASLLGEAVH-EAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTR 138
            :||||:||||||.|.:...|.|...:| ||...|.:|:. :|:.:.....::..:.:|.:.....
Yeast    61 LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG-DIKINVANFQKAKDDAVKQLTGGIE 124

  Fly   139 VDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEY------VVVAVGGR-PRYPDIPGAV 196
            :..:..||.|.....:|.|...|....:.|.| ..|..::      ::||.|.. ..:|.|....
Yeast   125 LLFKKNKVTYYKGNGSFEDETKIRVTPVDGLE-GTVKEDHILDVKNIIVATGSEVTPFPGIEIDE 188

  Fly   197 ELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRGFDRQMSELLAA 260
            |..::|....|.:..|.|..::|.|.:|||.......||.:.||: .:..:....|.::::....
Yeast   189 EKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQK 253

  Fly   261 MMTERGIPFLGTTIPKAVERQADGRLL-VRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLDAA 324
            .:.::|:.|..:|...:.:|..|..:: :...:|.|....:...:.:|.|:||:..|..|..:..
Yeast   254 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKI 318

  Fly   325 GVKTHDDK---IVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYAD 386
            |::.  ||   :|:|....:..|||..|||:.:| |.|...|...|......|..|... ::|.:
Yeast   319 GLEV--DKRGRLVIDDQFNSKFPHIKVVGDVTFG-PMLAHKAEEEGIAAVEMLKTGHGH-VNYNN 379

  Fly   387 VATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEF-FIPQKSVR-----HCYLKAVAE 445
            :.:.:::..|.:.||.:||...| .|.|        ||..:| |......:     ..::|.:.:
Yeast   380 IPSVMYSHPEVAWVGKTEEQLKE-AGID--------YKIGKFPFAANSRAKTNQDTEGFVKILID 435

  Fly   446 VSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEF 496
             |..::|||.|.|||.|||:|.....||:.|.:.:.:......|||.:|.|
Yeast   436 -SKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trxr-2NP_524216.1 NADB_Rossmann 29..>68 CDD:304358 13/43 (30%)
TGR 31..515 CDD:273624 127/485 (26%)
NADB_Rossmann <144..239 CDD:304358 26/101 (26%)
Pyr_redox 214..288 CDD:278498 16/75 (21%)
Pyr_redox_dim 388..497 CDD:280934 33/115 (29%)
LPD1NP_116635.1 Pyr_redox_2 24..498 CDD:423044 127/486 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1249
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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