DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trxr-2 and mtLPD2

DIOPT Version :9

Sequence 1:NP_524216.1 Gene:Trxr-2 / 40475 FlyBaseID:FBgn0037170 Length:516 Species:Drosophila melanogaster
Sequence 2:NP_566570.3 Gene:mtLPD2 / 820984 AraportID:AT3G17240 Length:507 Species:Arabidopsis thaliana


Alignment Length:512 Identity:139/512 - (27%)
Similarity:227/512 - (44%) Gaps:62/512 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGT 71
            :.:|..:|.|.|....|..||....|.|:|::|||..|...|.:||..|.:..|.:        .
plant    18 ISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAAIKAAQLGLKTTCIE--------K 74

  Fly    72 KWGIGGTCVNVGCIPKK-LMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNW 135
            :..:||||:||||||.| |:|.:.:..||.|....:|..|  :::..|...::......:|::..
plant    75 RGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKV--SSVEVDLPAMLAQKDTAVKNLTR 137

  Fly   136 VTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI 200
            ......:..||.||.....|.....:....:.| |:..|..::::||.|...:  .:|     ||
plant   138 GVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDG-ENVVVKGKHIIVATGSDVK--SLP-----GI 194

  Fly   201 TSDD--------IFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRGFDRQMSE 256
            |.|:        ..|....|.:.:|:||||:|||.......||.|.||: ..:.::...|.::.:
plant   195 TIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRK 259

  Fly   257 LLAAMMTERGIPFLGTTIPKAVERQADG-RLLVR----YRNTTTQMDGSDVFDTVLWAIGRKGLI 316
            .....:.::.:.|:..|....|:...|| :|:|.    ...||.:.      |.||.:.||....
plant   260 QFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGEQTTLEA------DVVLVSAGRTPFT 318

  Fly   317 EDLNLDAAGVKTHDDK---IVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGS 378
            ..|:|:..||:|  ||   |:|:...:|:|..::|:||:|.| |.|...|...| :......||.
plant   319 SGLDLEKIGVET--DKGGRILVNERFSTNVSGVYAIGDVIPG-PMLAHKAEEDG-VACVEFIAGK 379

  Fly   379 TQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEF-FIPQKSVR-----H 437
            ...:||..|...|:|..|.:.||.:|| .::..|..        |...:| |:.....:     .
plant   380 HGHVDYDKVPGVVYTYPEVASVGKTEE-QLKKEGVS--------YNVGKFPFMANSRAKAIDTAE 435

  Fly   438 CYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAE 494
            ..:|.:|:...| ||||:|.:.|.|||:|.....|:....:.:.:......|||.:|
plant   436 GMVKILADKETD-KILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trxr-2NP_524216.1 NADB_Rossmann 29..>68 CDD:304358 12/38 (32%)
TGR 31..515 CDD:273624 132/488 (27%)
NADB_Rossmann <144..239 CDD:304358 29/102 (28%)
Pyr_redox 214..288 CDD:278498 20/75 (27%)
Pyr_redox_dim 388..497 CDD:280934 29/113 (26%)
mtLPD2NP_566570.3 Pyr_redox_2 41..507 CDD:423044 132/489 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1249
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D581771at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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