back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment laza and Plpp3

DIOPT Version :9

Sequence 1:	NP_649391.1	Gene:	laza / 40468	FlyBaseID:	FBgn0037163	Length:	334	Species:	Drosophila melanogaster
Sequence 2:	NP_620260.2	Gene:	Plpp3 / 192270	RGDID:	620454	Length:	312	Species:	Rattus norvegicus

Alignment Length:	235	Identity:	82/235 - (34%)
Similarity:	127/235 - (54%)	Gaps:	21/235 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 FKRGFFCSDLSIRYPYK-DCTITVPMLLLMMLLLPMLFVAVVEIMRIC---KRFRTRL---YFRN 61
            ::|||:|:|.||:||.| ..||...:|..:.:::.:|.:...|..||.   ::.|:.:   |...
  Rat    62 YRRGFYCNDESIKYPLKVSETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTIQNPYVAA 126

  Fly    62 LWRAEATFSFGFIATYLTTELAKHAVGRLRPHFFHGCQPRLDDGSSCSDLQNAELYVEQFHCTNN 126
            |::....|.||...:...|::||.::|||||||...|.|      ..|.:..:|.|::.:.|...
  Rat   127 LYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCDP------DFSQINCSEGYIQNYRCRGE 185

  Fly   127 NLSTRQIRELHVSFPSAHSSLSFYSMVLLALYVHG--VWRGRGGVRVLRHVLQFLLLMAALCVSL 189
            :   .:::|...||.|.|:|.|.::|:.|.||:..  .||   |.|:||.:|||.|||.|....|
  Rat   186 D---SKVQEARKSFFSGHASFSMFTMLYLVLYLQARFTWR---GARLLRPLLQFTLLMMAFYTGL 244

  Fly   190 SRVADYWHHWSDVLAGALLGVTYAAITAAYVGNLLRRQTS 229
            |||:||.||.||||||...|...|.....:|.:|.:.:|:
  Rat   245 SRVSDYKHHPSDVLAGFAQGALVACCIVFFVSDLFKTKTT 284

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.