DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rich and AT5G28350

DIOPT Version :9

Sequence 1:NP_001262205.1 Gene:Rich / 40456 FlyBaseID:FBgn0028500 Length:1429 Species:Drosophila melanogaster
Sequence 2:NP_568507.3 Gene:AT5G28350 / 832920 AraportID:AT5G28350 Length:1127 Species:Arabidopsis thaliana


Alignment Length:1367 Identity:322/1367 - (23%)
Similarity:524/1367 - (38%) Gaps:376/1367 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYYPVGWPKRVGLALPGESASIRHICCDAVKI---LVAAVGDDFLGIW-YANPLIPIAYFRRTED 61
            ||...|||:.:.| |||...|.:.:.  .:|:   |:..|....|.:| .:...:.:..:.|.:.
plant     1 MYMAYGWPQVIPL-LPGSCPSSQRVV--YLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDK 62

  Fly    62 SLRQYGANQLIVWKPDSRQLALLTASGSLLLYQLDFEANGMGILQQIDPPAASLKRDSAELFIKE 126
            |:|:.|.|...||.||::.:|:||:|..|.:|::.|..      :::.|              .|
plant    63 SVREEGENLQAVWSPDAKLIAVLTSSFFLHIYKIKFTD------KRVKP--------------GE 107

  Fly   127 NIPRLSLRELCSVTLGSVITTVC-----CISLSE-------LLLATQSCELLRLQWT-ELEHA-- 176
            ..|    .|||..|:..:::...     .:|:|.       :||......|..:.|. |...|  
plant   108 RQP----SELCFATISLLLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFS 168

  Fly   177 -------ENDLEL---------------PALSS-IKLRDIPFYVQQQPQQSARNVPPLNRD---- 214
                   .||..|               |.|:| .|....|..||.:....::.:..||.|    
plant   169 IGSHPSDSNDDRLLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLV 233

  Fly   215 ---------SYVASLEYSPFIGG---CAAVFSDRRAAFLIANHLRFETDHMHGFWVPDVEDASVC 267
                     .|..|:.....:||   ||:|.|::                               
plant   234 VCSVNKKGLKYTESIRAEKKVGGDAVCASVASEQ------------------------------- 267

  Fly   268 SVNHKFRLLAYGQESSAVKVYAIDDATGGLEFSHRLILTENI-------LPDSLGSVNELKWSPD 325
                  ::||.|.....|::|         :.||.:.|...:       ..|..|.||.:.|:||
plant   268 ------QILAVGTRKGMVELY---------DLSHSISLLRTVSLHDWGYSADYTGPVNNIAWTPD 317

  Fly   326 GCVLAVSWTNGGLSLWSTFGALLMSTLSWDFGL--------NVDLVCQ-NPLK--IRRLEWSTEG 379
            ....||.|.:.||::||..|..||||:. ..||        |....|: .||.  ...::|...|
plant   318 NSAFAVGWKSRGLAVWSVSGCRLMSTVR-QIGLTSTSSPKINPKQDCKYEPLMSGTSAIQWDEYG 381

  Fly   380 YQLFMLKLHPEKDKSNVLQLQFVKSALSMNPCMTTSPHILLQGDDCLYLNQGNNLELTYAGSHGT 444
            |:||..:   |.....:|...|.|..|:......|....::.|||.|.:.|..            
plant   382 YRLFATE---EASYDRILAFSFGKCCLNRGVSGKTYVRQVMYGDDRLLMVQAE------------ 431

  Fly   445 FPSSGLGSDEDISGDGDCLELKQSPHTGSILTESKYWTVLQLPLNYAATNWPIRYAAIDPDGLHL 509
                          |.|.|:|..                |:||::|.:.|||:::.|...||.:|
plant   432 --------------DTDELKLLH----------------LKLPVSYISQNWPVQHVAASEDGKYL 466

  Fly   510 AVAGRTGLAHYSLVTRRWKLFGNESQEKDFVVSGGLLWWHGFVVMGCYSLLDRTDELRCYPADCK 574
            |.||..||..|.:..::|::||:.|||:. :...||||....||:..|.....|.||..||. ..
plant   467 AFAGLHGLILYDIRFKKWRVFGDVSQEQQ-IHCKGLLWLGKIVVICNYIEASETYELLFYPR-YH 529

  Fly   575 LDNQ--YGHKLQVRAPVISLNSFRHQLIVLTADGIVSLFN------MSKNSAYALDIECAYELDV 631
            ||..  ...|:.:..|:: ::.::..::|......:.:::      ::.:|...|.:....||.:
plant   530 LDQSSLLCRKVLLGKPMV-MDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSI 593

  Fly   632 KSICIHPACIVSLTVTNLKNELKPQGQLGGDQ----------AETIIVNVCGRILMIQRDAGEQV 686
            .:...|||.:..:...:|:     :|:|..|.          :..:|:...|.:.::....|.:.
plant   594 MTAKSHPAAMGFVPDQHLR-----EGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRER 653

  Fly   687 PNTLLATCLASCVEVFWLS--HSLERC-AMRDCLWLYSGAHGMRVWLPILPPGRERREGEQGGAQ 748
            .       |...||:||::  .|.|:. .:.:..||..|..||:||.|.|        |:....|
plant   654 E-------LTDSVELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSL--------GDDPFMQ 703

  Fly   749 RLHSFMSKRIMLSFPLKLYPLVVLFDNVIVLGVENESTLYANEQVSHFSLPFAVME--RKSQIYL 811
              ..|:.....|.|..::|||.:|.:..:|:||....:..|       |..||..|  .::|..|
plant   704 --EDFLQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSA-------SAEFACFEPTPQAQTIL 759

  Fly   812 HKVLRQLIKRNLGYSAWEMAQSCCSLPYFPHALELLLHEVLEEEATSKQPIPD------------ 864
            |.:||.|::|:....|..:||.....|:|.|.||.||..|.:.|.:  :|.|:            
plant   760 HCLLRHLLQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDAEIS--RPNPNRNQISGPGHLKK 822

  Fly   865 -AQLPSILDFIREFPVYLETIVQCARKTEIALWPYLFSMAGKPKDLFQMCLQSEQLDTAASYLII 928
             :.|....|.|::||.|.:.:|..||||:...|..|||.||....||:.|.|.....|||.|:::
plant   823 LSLLRKACDLIKKFPEYYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILV 887

  Fly   929 LQNLEPSVVSKQYATMLLDIALQQRKWELAKDLIRFLKAIDPNEIDSPRSSMVVNVKIAPPPQVN 993
            :..||...||:..|..||...|.:..::||.:|:|||.....:...:|..|..::.|:.      
plant   888 IAKLEGVAVSQYCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLL------ 946

  Fly   994 TQQQVNQNADAFNMVLGPIARERSFSTTVTSNLPKDKQAS---GTPGVAPVTESSSAGAPSVVRR 1055
                      .| ::.|...::.|.          ||.:|   .:|.||.|..            
plant   947 ----------GF-LIFGSSHKKSSL----------DKSSSFKEQSPHVASVKS------------ 978

  Fly  1056 RSTKQRETFCIDLILQRHARQLLQNHKLMDLGYMCAYLDFHLVSWLSQESERAAKLDDFAGALQA 1120
                         ||:.||..|:...:|..|........|.:|.:|.:|....|:|.:||..|:.
plant   979 -------------ILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCAQLQNFAAGLEL 1030

  Fly  1121 LHEELDLPIPFPTAAKDDFAQIRGSLRQTGGGGSSQTSESGYFSLATPNGAATQSPQLQPSIREE 1185
            :.::|.:            ::::..|             ...|.||.           ..|::.:
plant  1031 IGQKLQM------------SELQNRL-------------DAEFLLAQ-----------MCSVKFK 1059

  Fly  1186 EEELQQPSSLPILKT-RSGSQLSFDNFRYR----RLYSLPTSEDDLA-------VDILPQKLSIK 1238
            |       .:.:|.| ...|::.:|.|||.    :.||: |.|..||       :.||..|||..
plant  1060 E-------WIVVLATLLQRSEVLYDIFRYDLRLWKAYSV-TLESHLAFAHYHDLLQILEAKLSAT 1116

  Fly  1239 LR 1240
            .|
plant  1117 SR 1118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RichNP_001262205.1 WD40 repeat 265..312 CDD:293791 8/53 (15%)
RIC1 713..974 CDD:284476 86/275 (31%)
AT5G28350NP_568507.3 WD40 33..493 CDD:225201 130/575 (23%)
WD40 repeat 71..130 CDD:293791 18/82 (22%)
WD40 repeat 135..170 CDD:293791 7/34 (21%)
WD40 repeat 192..249 CDD:293791 12/56 (21%)
WD40 repeat 310..348 CDD:293791 16/38 (42%)
RIC1 677..932 CDD:284476 86/273 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 158 1.000 Domainoid score I1295
eggNOG 1 0.900 - - E1_KOG2006
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13806
Inparanoid 1 1.050 264 1.000 Inparanoid score I953
OMA 1 1.010 - - QHG55710
OrthoDB 1 1.010 - - D261419at2759
OrthoFinder 1 1.000 - - FOG0003567
OrthoInspector 1 1.000 - - otm2734
orthoMCL 1 0.900 - - OOG6_103873
Panther 1 1.100 - - O PTHR22746
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3432
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.880

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