DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rich and ric1

DIOPT Version :9

Sequence 1:NP_001262205.1 Gene:Rich / 40456 FlyBaseID:FBgn0028500 Length:1429 Species:Drosophila melanogaster
Sequence 2:XP_004910849.1 Gene:ric1 / 100170625 XenbaseID:XB-GENE-1001477 Length:1421 Species:Xenopus tropicalis


Alignment Length:1549 Identity:519/1549 - (33%)
Similarity:792/1549 - (51%) Gaps:263/1549 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYYPVGWPKRVGLALPGESASIRHICCDAVKILVAAVGDDFLGIWYANPLIPIAYFRRTEDSLRQ 65
            ||:..|||||:...|....... ||..|:.:|..:.:....|.|||:.|.:.||.::.:..:..|
 Frog     1 MYFLSGWPKRLLCPLKTVEKPF-HIQPDSQRIFFSVLSQTQLSIWYSRPSVLIASYKESAKATAQ 64

  Fly    66 YGANQLIVWKPDSRQLALLTASGSLLLYQLDFEANGMGILQQIDP---PAASLKRDSAELFIKEN 127
            :|..:...|:|||..:.:.||:|.:|.:.:........:.:.:.|   |...|.....|   ::.
 Frog    65 FGNYKQAEWRPDSSMIVIATANGYILFFDIIPVGEDKYLYEPVYPKGSPHIKLNPHYKE---EQC 126

  Fly   128 IPRLSLRELCSVTLGSVITTVCCISLSELLLATQSCELLRLQWTELEHAENDLELPALSSIKLRD 192
            .|.|:|.....:.|.:.||::..: :.:||:||:...|..:.|..:.:..        .:|.|..
 Frog   127 APALNLETKKVMDLQASITSIQSM-MEDLLVATEDGLLHIIHWEGMTNGR--------KAINLTT 182

  Fly   193 IPFYVQQQPQQSARNVPPLNRDSYVASLEYSPFIGGCAAVFSDRRAAFLIANHLRFETDHMHGFW 257
            |||.:..||.::...:.  ..|.::..:||...:.|.|.||:|.|..|:.....|...|.:||.|
 Frog   183 IPFSIDFQPSRAGSFLD--FGDVHIRDMEYCATLDGFAVVFNDGRVGFITPGSNRLTADQIHGVW 245

  Fly   258 VPDVEDASVCSVNHKFRLLAYGQESSAVKVYAIDDATGGLEFSHRLILTENILPD---SLGSVNE 319
            .|||.|.:..:||:|:||:|:|....:|.|:.||:.||.|:.||:|.||....||   ..|:|..
 Frog   246 APDVVDGTCVAVNNKYRLMAFGCVGGSVLVFTIDNTTGALQLSHKLELTPKQYPDMWNKTGAVKL 310

  Fly   320 LKWSPDGCVLAVSWTNGGLSLWSTFGALLMSTLSWDFGLNVDLVCQNPLKIRRLEWSTEGYQLFM 384
            ::||||..|:.|:|..|||||||.|||.|:.||..||....|...:..|:|..:.|.||||.|:.
 Frog   311 IRWSPDCSVVMVTWECGGLSLWSVFGAHLICTLGGDFDYRADGTKKEALRICSMSWGTEGYHLWA 375

  Fly   385 LKLHPEKD------------KSNVLQLQFVKSALSMNPCMTTSPHILLQGDDCLYLNQGNNLELT 437
            :.....::            :|.:||.||:||||::||||:....:||||:|.||||.|:..:..
 Frog   376 ITADSSQNTGYEMSDKSVPQQSGILQFQFIKSALTVNPCMSNQEQVLLQGEDRLYLNCGDATQTQ 440

  Fly   438 YA--GS----------HGTFPSSGLGSDEDISGDGDCLELKQSPHTGSILTESKYWTVLQLPLNY 490
            .|  ||          ...||.|        ||:...|         |.|...::|.|:|:...|
 Frog   441 NARNGSSQSEHKPLRDRSPFPGS--------SGNSQGL---------STLLGHRHWHVVQIQSTY 488

  Fly   491 AATNWPIRYAAIDPDGLHLAVAGRTGLAHYSLVTRRWKLFGNESQEKDFVVSGGLLWWHGFVVMG 555
            ..:||||||.|||..|.::||.|:.|.|||||:|::||||||.:||::.||||||.||..|:|:.
 Frog   489 LQSNWPIRYTAIDKVGQNVAVVGKFGFAHYSLLTKKWKLFGNITQEQNMVVSGGLSWWKEFIVLA 553

  Fly   556 CYSLLDRTDELRCYPADCKLDNQYGHKLQVRAPVISLNSFRHQLIVLTADGIVSLFNMSK----- 615
            |::|.::.:|||.|.....|||.:.|.::|:...:.|:.||..:|:..||..:.|:::.:     
 Frog   554 CFNLSEQQEELRVYLRTSNLDNAFAHVIKVQLETLLLSIFRDMVIIFRADCSICLYSIERKKEGP 618

  Fly   616 NSAYALDIECAYELDVKSICIHPACIVSLTVTNLKNE----LK-PQGQLGGDQAETIIVNVCGRI 675
            |.:..|.:  ..|:.:.....||:.:||:|:|:::.|    || ||...   .||:|::|:.|::
 Frog   619 NPSVCLQV--LQEVSMSRYIPHPSLVVSVTLTSVRTETGISLKMPQQAC---DAESILLNLAGQL 678

  Fly   676 LMIQRD-AGEQV--------PNTLLATC----LASCVEVFWLS--------HSLERCAMRDCLWL 719
            :|:||| :|.|:        .:.||..|    ||..||..|.:        |.||      .|||
 Frog   679 IMLQRDRSGPQIREKDAKTHQHKLLPFCAPVVLAQSVENVWSTCRANKQKRHLLE------ALWL 737

  Fly   720 YSGAHGMRVWLPILPPGRERREGEQGGAQRLHSFMSKRIMLSFPLKLYPLVVLFDNVIVLGVENE 784
            ..|..||:||||:.|  |:.|        :.|||:||||||.|.:.:|||.|||::.:|||..||
 Frog   738 SCGGAGMKVWLPLFP--RDHR--------KPHSFLSKRIMLPFHINIYPLAVLFEDALVLGAINE 792

  Fly   785 STLY--------ANEQVS-HFSLPFAVMERKSQIYLHKVLRQLIKRNLGYSAWEMAQSCCSLPYF 840
            :..|        ::|.:. ||  ||.::||.||||||.:||||:.||||..|..:||||.:||||
 Frog   793 TVAYDCLNNLSTSSEHLEVHF--PFCIVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALPYF 855

  Fly   841 PHALELLLHEVLEEEATSKQPIPDAQLPSILDFIREFPVYLETIVQCARKTEIALWPYLFSMAGK 905
            ||.|||:|||||||||||::||||..||::..||.|||::|:|:|.||||||.|||.|||:..|.
 Frog   856 PHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGN 920

  Fly   906 PKDLFQMCLQSEQLDTAASYLIILQNLEPSVVSKQYATMLLDIALQQRKWELAKDLIRFLKAIDP 970
            |||||:.||.::.|:|||||||||||:|.:.||:|:||:|.:.||:|.||:|.:.:|||||||..
 Frog   921 PKDLFEECLMAQDLETAASYLIILQNMEAAAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGS 985

  Fly   971 NEIDSPRSSMVVNVKIAPPPQVNTQQQVNQNADAFNMVLGPIARERSFSTTVTS-NLPKDK---Q 1031
            .|:::            ||....||:..:.....|       .|.||.|.:.:: |.|..|   |
 Frog   986 GEMET------------PPATPTTQEPSSTGGFEF-------FRHRSISLSQSAENFPSGKFNLQ 1031

  Fly  1032 ASGTPGVAPVTESSSAGAPSVVRRRSTKQRETFCIDLILQRHARQLLQNHKLMDLGYMCAYLDFH 1096
            .         |.|..:||......:.:...|...||::|.||||:||:..:|.|||...|.|.|.
 Frog  1032 K---------THSMPSGAAGKRWSKDSDCAENMYIDMMLWRHARRLLEEIRLKDLGGFAAQLGFE 1087

  Fly  1097 LVSWLSQESERAAKLDDFAGALQALHEELDLPIPFPTAAKDDFAQIRGSLRQTGGGGSSQTSES- 1160
            |:.||.:|..|||:::||..:|:.||::...|.|....|..:.....|..| |..|.....|:| 
 Frog  1088 LIGWLCKERTRAARVEDFVTSLKKLHKDFLWPFPVIPVASINSPFKNGKFR-TAVGEQFLKSQSA 1151

  Fly  1161 -GYFSL--ATPNGAATQSPQLQPSIREEEEELQQPSS----------LPILK------------- 1199
             |:.::  .||..:|.:|.....|:...:.|:...||          .|::.             
 Frog  1152 DGFLNMDVETPIPSAVRSHSWMGSLGTSQREMDSTSSHSPHTQDAFLSPLMNKADECSIGSATDL 1216

  Fly  1200 TRSGSQLSFD------NFRYRRLYSLPTSE-DDLAVDIL---PQKLSIKLRYLLQLFIEANCTDY 1254
            |.:.|.:..|      ||   ...||..|| :.:::::.   |.|..::|||||.:|:||.|.::
 Frog  1217 TETSSMVDGDWTMVDENF---STLSLTQSELEHISMELANKGPHKSQVQLRYLLHVFMEAGCLEW 1278

  Fly  1255 ALVLSILLQDAASISRIVNGIIRSESVHTCRRTESALKQLSQS---------TFEHSGSLYRGFV 1310
            .:::.::|::::.|::::|       :..|......:.|..||         |.:..|  |:.|:
 Frog  1279 CVIIGLILRESSVINQVIN-------LLQCPEVAEEMLQGIQSGLQAVDVWATTDCPG--YKPFL 1334

  Fly  1311 LTLQPHVYLLEQYIQSLGDAPCSQLQDAGPGTEQGVDVSTGLQGLQNEVGEFVPN-----SQQAN 1370
            ..::|               |..:|.            :|.::.:|.|.  |.|.     ::|: 
 Frog  1335 NIIRP---------------PLQKLS------------ATTVEQVQTEA--FQPTIPIKFTEQS- 1369

  Fly  1371 GNQWTVADLNP--NHQRLTRHASLESNGNAVVASGSSAHSTPTQRQLSRQNSRE 1422
                     :|  ...|::...|:....:....|| |.|.....||...:.|:|
 Frog  1370 ---------SPCIEESRISTSHSISPQSDTSSVSG-SRHEEDFSRQEKDETSQE 1413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RichNP_001262205.1 WD40 repeat 265..312 CDD:293791 19/46 (41%)
RIC1 713..974 CDD:284476 148/269 (55%)
ric1XP_004910849.1 RIC1 731..988 CDD:369192 149/274 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 394 1.000 Domainoid score I768
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H13806
Inparanoid 1 1.050 756 1.000 Inparanoid score I554
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D261419at2759
OrthoFinder 1 1.000 - - FOG0003567
OrthoInspector 1 1.000 - - oto103055
Panther 1 1.100 - - LDO PTHR22746
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2750
SonicParanoid 1 1.000 - - X3432
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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