DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpLP0 and rplJ

DIOPT Version :9

Sequence 1:NP_001262202.1 Gene:RpLP0 / 40451 FlyBaseID:FBgn0000100 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_418412.1 Gene:rplJ / 948490 ECOCYCID:EG10871 Length:165 Species:Escherichia coli


Alignment Length:41 Identity:13/41 - (31%)
Similarity:24/41 - (58%) Gaps:3/41 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 VGADNVG--SKQMQNIRTSLRGLAVVL-MGKNTMMRKAIRG 67
            |.||:.|  ..:|..:|.:.|...|.: :.:||::|:|:.|
E. coli    26 VVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEG 66

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0NP_001262202.1 PTZ00135 1..275 CDD:240285 13/41 (32%)
Ribosomal_P0_L10e 8..182 CDD:240221 13/41 (32%)
Ribosomal_60s 232..>285 CDD:278836
rplJNP_418412.1 rplJ 3..164 CDD:234632 13/41 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0244
Hieranoid 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
10.900

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