DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpLP0 and RPP0

DIOPT Version :9

Sequence 1:NP_001262202.1 Gene:RpLP0 / 40451 FlyBaseID:FBgn0000100 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_013444.1 Gene:RPP0 / 851052 SGDID:S000004332 Length:312 Species:Saccharomyces cerevisiae


Alignment Length:316 Identity:162/316 - (51%)
Similarity:224/316 - (70%) Gaps:7/316 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIR 66
            :||.    ||:||.|:.|..:|:...|:||.|||.|:||..:|..|||.||||||||||:|:|||
Yeast     4 IREK----KAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIR 64

  Fly    67 GHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLG 131
            |.|.:.|..|||||.:|||||||||...|.|:::.::.::|.||||.||:||..:.:.|.|||:.
Yeast    65 GFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGME 129

  Fly   132 PEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSG 196
            |.||||||||.:||||::|||||::||.::..|:|||.|||:|||:||||||::||.|.||||:|
Yeast   130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNG 194

  Fly   197 SIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKE 261
            .:|...||||..|:|.:.|...|:.:|::.|::||||:.|..|::.|.:|:|||:|......:.|
Yeast   195 QVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPE 259

  Fly   262 ATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
            ...:.:.|::|.|:||||.|:.:.|:|.|...:|.|.:   |.||.||||||||||
Yeast   260 IEDLVDRIENPEKYAAAAPAATSAASGDAAPAEEAAAE---EEEESDDDMGFGLFD 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0NP_001262202.1 PTZ00135 1..275 CDD:240285 138/272 (51%)
Ribosomal_P0_L10e 8..182 CDD:240221 99/173 (57%)
Ribosomal_60s 232..>285 CDD:278836 19/52 (37%)
RPP0NP_013444.1 Ribosomal_L10_P0 5..312 CDD:412342 160/313 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343637
Domainoid 1 1.000 111 1.000 Domainoid score I1372
eggNOG 1 0.900 - - E1_COG0244
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6517
Inparanoid 1 1.050 323 1.000 Inparanoid score I447
Isobase 1 0.950 - 0 Normalized mean entropy S250
OMA 1 1.010 - - QHG62173
OrthoFinder 1 1.000 - - FOG0003199
OrthoInspector 1 1.000 - - oto99508
orthoMCL 1 0.900 - - OOG6_100781
Panther 1 1.100 - - LDO PTHR45699
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2259
SonicParanoid 1 1.000 - - X1858
TreeFam 1 0.960 - -
1615.740

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