DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpLP0 and mrto4

DIOPT Version :9

Sequence 1:NP_001262202.1 Gene:RpLP0 / 40451 FlyBaseID:FBgn0000100 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_001017657.1 Gene:mrto4 / 550350 ZFINID:ZDB-GENE-050417-142 Length:242 Species:Danio rerio


Alignment Length:193 Identity:50/193 - (25%)
Similarity:86/193 - (44%) Gaps:21/193 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LFDEFPKC-------FIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAI-RGHL-ENNPQL 75
            |.:|..||       |:...:|:.:.::::|||:.|. :....|||.:|..|: :|.. |....|
Zfish    26 LIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAWRH-SRFFFGKNKVMMIALGKGPTDEYKDNL 89

  Fly    76 EKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGP------EK 134
            .||...::|.||.:||.....||::.....|....||.|..|.:.|.:..     ||      ..
Zfish    90 HKLSRFLRGEVGVLFTNKTKDEVQEYFGNFKEVDYARAGNTASMAVTLDE-----GPLDQFPHSM 149

  Fly   135 TSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGS 197
            ....:.|.:||.:.||.:.:|.|..:.|.||.:...:|.:|.:.......:.|.:..:::|.|
Zfish   150 EPQLRQLGLPTALKKGAVTLIKDFEVCKEGDTLTPEQARILKLFGFEMAEFKLSIKCMWNSES 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0NP_001262202.1 PTZ00135 1..275 CDD:240285 50/193 (26%)
Ribosomal_P0_L10e 8..182 CDD:240221 47/176 (27%)
Ribosomal_60s 232..>285 CDD:278836
mrto4NP_001017657.1 Ribosomal_P0_like 21..183 CDD:240222 45/162 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0244
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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