DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpLP0 and rpp0

DIOPT Version :9

Sequence 1:NP_001262202.1 Gene:RpLP0 / 40451 FlyBaseID:FBgn0000100 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_588393.1 Gene:rpp0 / 2538893 PomBaseID:SPCC18.14c Length:312 Species:Schizosaccharomyces pombe


Alignment Length:308 Identity:163/308 - (52%)
Similarity:214/308 - (69%) Gaps:3/308 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLENNPQ 74
            |||||.|:..||:::...|:|..|||.|:||..:|..|||.|.::||||||:|:|:||.:.:.|:
pombe     8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPE 72

  Fly    75 LEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQ 139
            ||:|||.::||||||||..||.|||:.::.:.:.|||||.|||||.|.:||.|||:.|.||||||
pombe    73 LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQ 137

  Fly   140 ALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEIL 204
            ||.|||||::|||||.:||.::....|||.||||||||||||||:||:.|..:||.|::||||||
pombe   138 ALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEIL 202

  Fly   205 DIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYI 269
            |:..|||........:.:.|:.|...||||.|..||:.|.:|||:|::..||..|:.....|.::
pombe   203 DVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFL 267

  Fly   270 KDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
            .|||.|..||:.:|  ||||..| ...|:....|.||.|:||||||||
pombe   268 ADPSAFVVAAAPAA--AAGGEAE-APAAEAAAEEEEESDEDMGFGLFD 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0NP_001262202.1 PTZ00135 1..275 CDD:240285 141/264 (53%)
Ribosomal_P0_L10e 8..182 CDD:240221 101/171 (59%)
Ribosomal_60s 232..>285 CDD:278836 22/52 (42%)
rpp0NP_588393.1 PTZ00135 5..312 CDD:240285 161/306 (53%)
Ribosomal_P0_L10e 6..180 CDD:240221 101/171 (59%)
Ribosomal_60s 230..311 CDD:278836 37/83 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 108 1.000 Domainoid score I1657
eggNOG 1 0.900 - - E1_COG0244
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6517
Inparanoid 1 1.050 321 1.000 Inparanoid score I549
OMA 1 1.010 - - QHG62173
OrthoFinder 1 1.000 - - FOG0003199
OrthoInspector 1 1.000 - - oto101127
orthoMCL 1 0.900 - - OOG6_100781
Panther 1 1.100 - - LDO PTHR45699
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2259
SonicParanoid 1 1.000 - - X1858
TreeFam 1 0.960 - -
1413.860

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