| Sequence 1: | NP_001305844.1 | Gene: | LSAMP / 4045 | HGNCID: | 6705 | Length: | 361 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_038944182.1 | Gene: | Lsamp / 29561 | RGDID: | 71102 | Length: | 378 | Species: | Rattus norvegicus |
| Alignment Length: | 336 | Identity: | 332/336 - (98%) |
|---|---|---|---|
| Similarity: | 334/336 - (99%) | Gaps: | 0/336 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 26 GLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRH 90
Human 91 SLEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMA 155
Human 156 NGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVNYPPT 220
Human 221 ITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHY 285
Human 286 GNYTCVAANKLGVTNASLVLFKRVLPTIPHPIQEIGTTVHFKQKGPGSVRGINGSISLAVPLWLL 350
Human 351 AASLLCLLSKC 361 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LSAMP | NP_001305844.1 | Ig | 38..128 | CDD:386229 | 88/89 (99%) |
| Ig | 132..215 | CDD:386229 | 81/82 (99%) | ||
| Ig_3 | 219..294 | CDD:372822 | 74/74 (100%) | ||
| Lsamp | XP_038944182.1 | Ig | 55..145 | CDD:416386 | 88/89 (99%) |
| FR1 | 55..71 | CDD:409353 | 15/15 (100%) | ||
| Ig strand A' | 56..62 | CDD:409353 | 5/5 (100%) | ||
| Ig strand B | 64..72 | CDD:409353 | 7/7 (100%) | ||
| CDR1 | 72..76 | CDD:409353 | 3/3 (100%) | ||
| FR2 | 77..84 | CDD:409353 | 6/6 (100%) | ||
| Ig strand C | 77..83 | CDD:409353 | 5/5 (100%) | ||
| CDR2 | 85..95 | CDD:409353 | 9/9 (100%) | ||
| Ig strand C' | 87..90 | CDD:409353 | 2/2 (100%) | ||
| Ig strand C' | 92..95 | CDD:409353 | 2/2 (100%) | ||
| FR3 | 96..131 | CDD:409353 | 33/34 (97%) | ||
| Ig strand D | 100..107 | CDD:409353 | 6/6 (100%) | ||
| Ig strand E | 110..116 | CDD:409353 | 5/5 (100%) | ||
| Ig strand F | 123..131 | CDD:409353 | 7/7 (100%) | ||
| CDR3 | 132..136 | CDD:409353 | 3/3 (100%) | ||
| Ig strand G | 136..145 | CDD:409353 | 8/8 (100%) | ||
| FR4 | 138..145 | CDD:409353 | 6/6 (100%) | ||
| Ig_3 | 148..218 | CDD:404760 | 68/69 (99%) | ||
| Ig strand A' | 155..160 | CDD:409353 | 4/4 (100%) | ||
| Ig strand B | 166..173 | CDD:409353 | 6/6 (100%) | ||
| Ig strand C | 179..184 | CDD:409353 | 4/4 (100%) | ||
| Ig strand D | 190..193 | CDD:409353 | 2/2 (100%) | ||
| Ig strand E | 197..203 | CDD:409353 | 5/5 (100%) | ||
| Ig strand F | 210..217 | CDD:409353 | 6/6 (100%) | ||
| Ig strand G | 224..232 | CDD:409353 | 7/7 (100%) | ||
| Ig_3 | 235..311 | CDD:404760 | 75/75 (100%) | ||
| Ig strand B | 252..256 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 265..269 | CDD:409353 | 3/3 (100%) | ||
| Ig strand E | 290..294 | CDD:409353 | 3/3 (100%) | ||
| Ig strand F | 304..309 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 318..321 | CDD:409353 | 2/2 (100%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83688530 | |
| Domainoid | 1 | 1.000 | 195 | 1.000 | Domainoid score | I24840 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H20533 | |
| Inparanoid | 1 | 1.050 | 671 | 1.000 | Inparanoid score | I9190 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG43105 | |
| OrthoDB | 1 | 1.010 | - | - | D125599at9347 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000150 | |
| OrthoInspector | 1 | 1.000 | - | - | oto141192 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_111394 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR42757 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X97 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| 18 | 18.270 | |||||