DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-eta and kpa1

DIOPT Version :9

Sequence 1:NP_649371.2 Gene:DNApol-eta / 40438 FlyBaseID:FBgn0037141 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_587767.2 Gene:kpa1 / 2539547 PomBaseID:SPCC553.07c Length:547 Species:Schizosaccharomyces pombe


Alignment Length:504 Identity:116/504 - (23%)
Similarity:199/504 - (39%) Gaps:144/504 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGII-AVNYAARAKGVTRHMRGDEAKD 79
            ::::.||.|.|:..:||.::|:.::.|:||       |..:: ..||.||..||...|....|:.
pombe   130 QIIVHVDCDAFYASIEELKNPKLKSLPMAV-------GKSVLCTANYVARKFGVRSAMPEFIARK 187

  Fly    80 LCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQS 144
            :||::|:  :|     .:.|:|....||:.|||.::...|..||:||.|:::|   :|       
pombe   188 ICPDLVV--IP-----LNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLT---SH------- 235

  Fly   145 GAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGA 209
                |:.|||..|           |..||                                    
pombe   236 ----LRLQELAFT-----------VENIT------------------------------------ 249

  Fly   210 SVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTE--TASLFDSLPVGKIKG 272
            .|..::|..|.:|||...|.|||.||:|||:|:...|||.|..:|..|  .:...:.|||.::.|
pombe   250 MVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPVREVSG 314

  Fly   273 LGGKFGEVVCETLG--IKFMGQV----VKFSEVDLQRKFDEKNGTWLFNISRG-----IDLEAVT 326
            :|....:   :.||  ||..|.:    |..|.:.|.:.|..     |...|.|     :|....:
pombe   315 IGRVLEQ---QLLGLEIKTCGDIQRNLVILSYIFLPKSFQN-----LLRCSYGFGTTILDEYGES 371

  Fly   327 PRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEK-DFIENNRRAKHMVVQYVQDID 390
            .|   |:||....|  .:|::....:::.|..|...:::.|:| ..:.|:...|:...::     
pombe   372 KR---KTIGSEATF--SSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNSIAIKYKTSEF----- 426

  Fly   391 GEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLR---------------------------- 427
             :.....:|.....:.:..:::.:|.|::.:....:|                            
pombe   427 -QVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRATKLVSKSRCLAMQLKFQSQNTV 490

  Fly   428 --PGSESALNNAIKFLGISVG---KFETVSSGQNKLQEMFANQAAKKRR 471
              |..:..:.|.:..|...|.   ..|||.|..|  .:..||...|||:
pombe   491 PCPVCQKNIENELGILNQHVDLCLNVETVKSLIN--TDHTANPTIKKRK 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-etaNP_649371.2 PolY_Pol_eta 20..447 CDD:176456 106/474 (22%)
zf_UBZ 705..736 CDD:408236
zf_UBZ 805..832 CDD:408236
kpa1NP_587767.2 DinP 130..474 CDD:223466 102/437 (23%)
PolY_Pol_IV_kappa 133..471 CDD:176459 102/431 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 93 1.000 Domainoid score I1991
eggNOG 1 0.900 - - E1_COG0389
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4551
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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