DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PolH and polk-1

DIOPT Version :10

Sequence 1:NP_649371.2 Gene:PolH / 40438 FlyBaseID:FBgn0037141 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001122692.1 Gene:polk-1 / 176209 WormBaseID:WBGene00017696 Length:596 Species:Caenorhabditis elegans


Alignment Length:537 Identity:127/537 - (23%)
Similarity:211/537 - (39%) Gaps:121/537 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RSHVSMQN---------KYDRVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAV- 59
            :|.:.|:|         ...|..:.:|||.:|..||.:.:|..|..|:||         |..|: 
 Worm    63 KSEILMENLEMKLESSRDLSRDCVCIDMDAYFAAVEMRDNPALRTVPMAV---------GSSAML 118

  Fly    60 ---NYAARAKGVTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLER 121
               ||.||..||...|.|..:..|||.:.:  ||     .:..||....::.:.:...:...:..
 Worm   119 STSNYLARRFGVRAGMPGFISNKLCPSLTI--VP-----GNYPKYTKVSRQFSQIFMEYDSDVGM 176

  Fly   122 ASVDEAYLDITETV--NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDE 184
            .|:|||::|:|:.|  |...:..:...|.......:..|.....::.|.  ||..... |..:..
 Worm   177 MSLDEAFIDLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTLEDL--KIEESIC-PKCEKS 238

  Fly   185 RYQMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNK 249
            | ::.||..:....|:..:|         |:|..|::.||..||||||.|.:|||:.:.:||||.
 Worm   239 R-KIYYDHVEFGTGREEAVR---------EIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNG 293

  Fly   250 QTILPLTETA--SLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTW 312
            |.:|...:.|  .....||:.|:.|:|.     |||          .:...:|:|...|      
 Worm   294 QYVLENDKNAIMEFLKDLPIRKVGGIGR-----VCE----------AQLKAMDIQTVGD------ 337

  Fly   313 LFNISRGIDLEAVTP----RFYSKSIGC----CKKFPGRNNITGLKTLQHWLGELSSEINDRLEK 369
             .|:.:.:.....||    .|...::|.    .:..|.|.:|:..:|...     :|:.|..|| 
 Worm   338 -MNLKKNLYPLCFTPLSQESFLRTALGLPGRPSESDPRRKSISVERTFSP-----TSDFNILLE- 395

  Fly   370 DFIENNRRAKHMVV--QYVQDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSES 432
                     :|..:  ...:|:....:...::..|         :|.|......|:: |.|    
 Worm   396 ---------EHQEICRMLEEDVRKSGIVGGKTVTL---------KLKLSSFDVLTRS-LTP---- 437

  Fly   433 ALNNAIKFLGISVGKFETVSSGQNKLQEMFANQAAKKRRVSGDEPGQLPKVEMEKKQKQT-DEF- 495
              ::.:|.|. .:.||..         |:...:..|:.|:.|....||...|.|||:.:| .|| 
 Worm   438 --SDVVKSLE-DIQKFSL---------ELLEKEKGKEIRLLGVRLSQLIFEEDEKKRSKTITEFW 490

  Fly   496 KMKSFFANYLQGAKKED 512
            ..|......|||::..|
 Worm   491 NEKKLQIQNLQGSENVD 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolHNP_649371.2 PolY_Pol_eta 20..447 CDD:176456 103/444 (23%)
zf_UBZ 705..736 CDD:465769
zf_UBZ 805..832 CDD:465769
polk-1NP_001122692.1 PolY_Pol_IV_kappa 86..473 CDD:176459 109/478 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.