DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and KHSRP

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001353228.1 Gene:KHSRP / 8570 HGNCID:6316 Length:747 Species:Homo sapiens


Alignment Length:645 Identity:145/645 - (22%)
Similarity:222/645 - (34%) Gaps:168/645 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDNNTSSS----AGGASIK------HEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGA 55
            :||.:...|    :.|.||.      |..|..::|....:....||.|||:.||.:|:.:::||.
Human   112 LEDGDQPESKKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGC 176

  Fly    56 KINIS--DGSCPERIVTVSGTTNAIFSAFTLITKKFEEWCS--------QFNDVGKVGKTQIPIR 110
            |:.||  .|..|||.|:::|...::..|..::    ::..|        ||:|....|:......
Human   177 KVQISPDSGGLPERSVSLTGAPESVQKAKMML----DDIVSRGRGGPPGQFHDNANGGQNGTVQE 237

  Fly   111 LIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPN-STERAVTLSGSAEQITQCIYQICLV 174
            :::||.:.|.:|||.|..||::::..|..:.:..:...| :.::.:.:.|...::.|....:..:
Human   238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDI 302

  Fly   175 MLESPP--------------RGATIPYRPKPQVTGPVILANGQAF-TIQGNYAVPTQETCPVFPL 224
            :.|...              .|..:|. |:..| |.||..:|:.. .||.:..|..|     |..
Human   303 LRERDQGGFGDRNEYGSRIGGGIDVPV-PRHSV-GVVIGRSGEMIKKIQNDAGVRIQ-----FKQ 360

  Fly   225 ALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVAKNPLASLAA-----LGLAGMNPA 284
            ...||.            .|.||:.|......|..:.:.|:    |.||.:     .|..||.|.
Human   361 DDGTGP------------EKIAHIMGPPDRCEHAARIINDL----LQSLRSGPPGPPGGPGMPPG 409

  Fly   285 STG---GINHTANPANRAQQQQHEMTVS--NDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERE 344
            ..|   |..:...|..       |||.|  ....|.:||:||..:..|.|.:||.:.||......
Human   410 GRGRGRGQGNWGPPGG-------EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN 467

  Fly   345 GGNTDRTITISGNPDSVALAQYLINMSVELQKANLLEQAQSQQNGGAAAAPGAAAAGVAAVTGAA 409
            |....:...|.|:|..:..|:.||...:|                |.....|....|    .|.|
Human   468 GDPNFKLFIIRGSPQQIDHAKQLIEEKIE----------------GPLCPVGPGPGG----PGPA 512

  Fly   410 APTSATNGAITTVTLTSGTGVVGAGAAGAAGVANGANP---AANGGGS-----------NGTISA 460
            .|....|           .|....|..||...|.|..|   ...|.|:           :.:.:|
Human   513 GPMGPFN-----------PGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAA 566

  Fly   461 TGYASANGGQATNGS------VGVNPAAAAALSSPLASALQLLTKPGALSALSNLSALDLLNLTT 519
            ...|..|...|...|      .|..|..|.|.::|.|........|                   
Human   567 AAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPP------------------- 612

  Fly   520 LGNTNGAGA-------------NPGGPPVQTTGVNRAKGHYATSRFRQHQTETGGEAEKP 566
            .|.::...|             .||.||.|  ...:|...|..   :|.|..|||....|
Human   613 TGQSDYTKAWEEYYKKIGQQPQQPGAPPQQ--DYTKAWEEYYK---KQAQVATGGGPGAP 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 20/67 (30%)
KH-I_PCBP_rpt2 107..177 CDD:411806 13/70 (19%)
KH-I_PCBP_rpt3 301..371 CDD:411867 22/71 (31%)
KHSRPNP_001353228.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..147 8/34 (24%)
KH-I_FUBP2_rpt1 145..215 CDD:411907 22/73 (30%)
KH-I_FUBP2_rpt2 233..305 CDD:411910 13/71 (18%)
KH-I_FUBP2_rpt3 323..390 CDD:411913 21/89 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..429 11/43 (26%)
KH-I_FUBP2_rpt4 426..494 CDD:411916 22/67 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 497..569 17/86 (20%)
4 X 12 AA imperfect repeats 571..684 25/121 (21%)
DUF1897 671..>685 CDD:462653
Blue background indicates that the domain is not in the aligned region.

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