DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and PBP2

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_009792.3 Gene:PBP2 / 852533 SGDID:S000000437 Length:413 Species:Saccharomyces cerevisiae


Alignment Length:394 Identity:95/394 - (24%)
Similarity:168/394 - (42%) Gaps:64/394 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 HEDPS---VTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTTN 76
            |:.|.   ..:.:|::...|....|:|.||..::|.:.|:.|:||||:.  ..|||||.|.||.:
Yeast    57 HDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCD 121

  Fly    77 AIFSAFTLITKK-FEEWCSQFN--DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGC 138
            .:..|:.:|.:. .||..::.|  |:      :|.|.|::|....|.:|||.||:::||...:..
Yeast   122 DVAKAYGMIVRALLEEHGNEDNGEDI------EISINLLIPHHLMGCIIGKRGSRLREIEDLSAA 180

  Fly   139 SIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVML----ESPPRGATIPYRPKPQVTGPVIL 199
            .:..:...|..|.:|.:|::|..:.|....:.|...:|    |||.:........:|.....|::
Yeast   181 KLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQFNSVLI 245

  Fly   200 ANGQAFTI--QGNY---------AVPTQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIP 253
            .:.|..||  |.|:         :....:..|:....|:          :|.|....|.:..|..
Yeast   246 DHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLS----------MATPQYTTASVANATA 300

  Fly   254 AHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINHTANPANRAQQQ--QHEMTVSNDLIGCI 316
            ...:.:.....|...|:.|          ||          |.|.....  |.|:.:....:|.:
Yeast   301 FQPNFVIPNVTVLDGPVIS----------PA----------PGNHLLMNFVQQEIFIDEKFVGNV 345

  Fly   317 IGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQKANLLE 381
            |||.|..|..:::.:|..|.|.:..|   |:::|.:||.|...:...|..||:..:|:.::|...
Yeast   346 IGKDGKHINSVKESTGCSIIIQDPVE---GSSERRLTIRGTFMASQAAIMLISNKIEIDRSNAER 407

  Fly   382 QAQS 385
            :.:|
Yeast   408 KRRS 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 22/62 (35%)
PCBP_like_KH 109..172 CDD:239089 17/62 (27%)
KH-I 305..368 CDD:238053 17/62 (27%)
PBP2NP_009792.3 KH-I_PCBP_rpt1 69..137 CDD:411866 23/67 (34%)
KH-I_Rnc1_rpt2 150..218 CDD:411884 18/67 (27%)
KH-I 334..394 CDD:411802 17/62 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I3151
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 92 1.000 Inparanoid score I1526
Isobase 1 0.950 - 0.861654 Normalized mean entropy S2056
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001027
OrthoInspector 1 1.000 - - otm46712
orthoMCL 1 0.900 - - OOG6_103287
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 1 1.000 - - X408
TreeFam 1 0.960 - -
1312.800

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