DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and pcbp2

DIOPT Version :10

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001039068.1 Gene:pcbp2 / 733863 -ID:- Length:362 Species:Xenopus tropicalis


Alignment Length:398 Identity:154/398 - (38%)
Similarity:203/398 - (51%) Gaps:106/398 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 KTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCI 168
            |..:.:||:||||||||||||.||||||||::||..:|||.:|||||||||||:||:.:.|.||:
 Frog     9 KPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCV 73

  Fly   169 YQICLVMLESPPRGATIPYRPKPQVTGPVILANGQ-----------------------AFTIQGN 210
            .|||:|||||||:|||||||||| .:||:|.|.||                       ||.|||.
 Frog    74 KQICVVMLESPPKGATIPYRPKP-ASGPIIFAGGQVRAETILASAGNHTVLAQPQPAPAFAIQGQ 137

  Fly   211 YAVPTQETCPVFPLALATGGLHAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVAKNPLASLAA 275
            ||:|..:...:..||:.    |...:.|.                    |..|...         
 Frog   138 YAIPHPDLTKLHQLAMQ----HTPFTPLG--------------------QTTPGFP--------- 169

  Fly   276 LGLAGMNPASTGGINHTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNC 340
             ||...:|.|:                 ||:|:.|||||||||:.|:||.||||:|||.|:|:|.
 Frog   170 -GLDATSPTSS-----------------HELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANA 216

  Fly   341 EEREGGNTDRTITISGNPDSVALAQYLINMSVELQKANL--------------LEQAQSQQNGGA 391
            .|   ||.:|.:||:|:|.:::|||||||.|:|:.|.:.              |.|:.:..:...
 Frog   217 SE---GNGERQVTITGSPANISLAQYLINASLEMAKLSTQTASVTTPVDLNMNLSQSTTPSSTPT 278

  Fly   392 AAAPGAAAAGVAAV-------------TGAAAPTSATNGAITTVTLTSGTGVVGAGAAGAAGVAN 443
            :.|..||||..:||             |..|.|.|:..| :.||.|.:......|||.|......
 Frog   279 SMAVLAAAAAASAVSVNSPPPLQTLPTTHYAVPVSSLLG-MKTVPLLALNAAATAGATGNLTAYT 342

  Fly   444 GANPAANG 451
            ...|:.:|
 Frog   343 AKIPSTSG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866
KH-I_PCBP_rpt2 107..177 CDD:411806 48/69 (70%)
KH-I_PCBP_rpt3 301..371 CDD:411867 40/69 (58%)
pcbp2NP_001039068.1 KH-I_PCBP3_rpt2 7..85 CDD:411947 52/75 (69%)
KH-I 170..244 CDD:469614 44/93 (47%)
Blue background indicates that the domain is not in the aligned region.

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