DRSC/TRiP Functional Genomics Resources

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Protein Alignment mub and Pcbp3

DIOPT Version :9

Sequence 1:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster
Sequence 2:XP_006513979.1 Gene:Pcbp3 / 59093 MGIID:1890470 Length:394 Species:Mus musculus


Alignment Length:397 Identity:194/397 - (48%)
Similarity:241/397 - (60%) Gaps:89/397 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG 73
            |.||.       :|||||||:|.|||||||||||||.|.:.||||||:||||:|:|||||||::|
Mouse    38 SEGGL-------NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95

  Fly    74 TTNAIFSAFTLITKKFEE-WCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
            .|:|||.||.:|..|||| ..:..::.....|..:.:||:||||||||||||.||||||||::||
Mouse    96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160

  Fly   138 CSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILANG 202
            ..:|||.:|||||||||||:||:.:.|.||:.|||:|||||||:||||||||||..| |||.|.|
Mouse   161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST-PVIFAGG 224

  Fly   203 Q-----------------------AFTIQGNYAVP------------TQETCPVFPLALATGGLH 232
            |                       |:||||.||:|            .|:| |..||        
Mouse   225 QVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDQLTKLHQLAMQQT-PFPPL-------- 280

  Fly   233 AGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINHTANPAN 297
                |..:|...|..|    |.|      ..:.|:|.:..  :.||....||||           
Mouse   281 ----GQTNPAFPGEKL----PLH------SSEEAQNLMGQ--SSGLDASPPAST----------- 318

  Fly   298 RAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVA 362
                  ||:|:.|||||||||:.||||.||||:|||.|:|:|..|   |:::|.|||:|.|.:::
Mouse   319 ------HELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANIS 374

  Fly   363 LAQYLIN 369
            |||||||
Mouse   375 LAQYLIN 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 44/60 (73%)
PCBP_like_KH 109..172 CDD:239089 44/62 (71%)
KH-I 305..368 CDD:238053 37/62 (60%)
Pcbp3XP_006513979.1 PCBP_like_KH 47..108 CDD:239089 44/60 (73%)
PCBP_like_KH 131..195 CDD:239089 44/63 (70%)
KH-I 318..380 CDD:238053 39/81 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831595
Domainoid 1 1.000 97 1.000 Domainoid score I7213
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H23233
Inparanoid 1 1.050 328 1.000 Inparanoid score I2438
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52907
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001027
OrthoInspector 1 1.000 - - otm43000
orthoMCL 1 0.900 - - OOG6_103287
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 1 1.000 - - X408
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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